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EMAGE:24407

mm451 VISTA mouse element 451
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24407

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm451 - embryo 2.
Expression Pattern Description
Spatial Annotation:
EMAGE:24407Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24407_wholemount_strong.wlz
24407_wholemount_moderate.wlz
24407_wholemount_weak.wlz
24407_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24407_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
limb
detected detected
VISTA annotation: limb (8 out of 12 embryos)
future spinal cord
detected detected
VISTA annotation: neural tube (6 out of 12 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm451 VISTA mouse element 451
Sequence:chr6:143385859-143387546  (UCSC mouse mm9 )
>mm451
TTAGGGGTATGAGCATAATTCGAGGATTACAGATTTGGTGGCGACGCCTGGACATCTGAGTAAGCCTTCG
GGACCAGTCGACTGATGTAAACATAAGCTCTAATCACGTAGCAGGCATAGGGTCTCCGTATTTCACAGAC
TGGCTCAGGCCTTTCGTATTTTTATCCTCAATAATGTATGCATTTTCCAGCTGGCTAGGGCTGCAGTCGC
TCCGCGATTTGGACATTTGTCACTCCATTCAGCCAAGCAAGAGAAGCCCCCGTGTCGCGGGCTCCTCTCA
CTGCGGGCATAGCATCTGTGAAGGAGATGCCTGACAGACATCTGATGATTCAAATCGCAGAAATGATCCG
GGACAAATTATGAATGTCTGGGCAGTGCCCAAAGATCTGAGCTGAAATGACTTTGTCCTTGGAGCCTTGC
AGCTTTGGTGAACTCCTGGGGCCCACGAGCTCTCCCCTTACACAAGACTGCGTAGGGCAATGCCCCACAG
CTTTAGCCGGCTACCCTTCTGGCCAACCGGTTGCCGGATTTAGCTTTCCTTGGCCTGAAATAAAAAGGAC
GCGGTTCAAGTCTTAGCTTACAAACCCCGGAGGCAACTGGAGCTTTCTTTGAAATGTAAAGCAGTCTTCT
ATCAAGGGCTGCTTAGGGTATCATCCAGCTATCAAAGTGAAAGATGATTTTGATAGACCCTTACAAATCC
CTCGTAATCTATGGAAAGTAGTAGCTAGGACTCGCTCTCCGTGTTTGCACATAGCTGGAGAAGCAAGAGG
ATAATTTATCCAACTTTAGGGTAATGAAGTGTTAACAAAAACCACACGGAGCTATTATGACAACCACAGG
CCGCAGACTGCTAAGAGGGTAAACTCTCCGAAGACCTACCTAGTTTCAAGGAATCCTTCACGGTGCAGCT
GACCCGAAGGCATTTGCTAAACACAAGGTGGTATTGCTGAAGGAGTGAGATTCATTAGGCCTAATGAACA
GCGCTGAACGTATTGTCTCTACCATCTAACCCGCTGACATTGATGTAGATCTACTTTAACTCATTCCTCC
CAACTTTATTAGGTACATATGTCTACAGCAGACTCGAATGAAACATTCTACAACTAGGCTCCAAGCCAAA
AACTAATTTATTCTTTAATGTGGTAGTGATTACTTGGTGGTTCCTTGAGCAGAGATGACAGGTCTGAGCT
AATGGAGTTGTACTGTAAGTTAATATAAATCATGACAGAGCAATTAATTACAGAGACCGCAGCAAATCCC
TGTGTTAGTTTCCCCTGCCACCAGAAGGATTTAATAATATTCATTTTGCTAAGTTCCAGTGACATTTACA
AGTCTTCAACCATTTTTAATCAAATCAATATCACTGGCTGCTAAATTTAGTTGCGCTTTGCTTGCAAGTC
CGGGAATACGTGGATGCTGTTCCCACCTTCTGTTCAGATGAAGCCCATAGGATGTCCACACTTCCCCTGC
CTTTGTTTATGTGGAGGAATTGGAATCTGGGAAAAGTTCAGACGCAGAGAACCCTGGCTTGCCAGCAGGC
ATGCTAACAGGTGGAGGAGGCCATCTTTGACTTAGCGATCTCCTGGGTGTCATTGTATCTAATGTCCTTC
ATCTGTTTCTCTTAATTAGCCTTAAACCAACAACAACAAACAAGACTTCCCCACTTCGCATTCCTGTAGA
CCTTTGGA
(Equivalent human sequence - chr12:23145928-23147642  (UCSC human hg19 ))
Flanking Genes:D6Ertd474e - Sox5 (mouse)
Primers:Vector specific   fwd:(+)caccGGGTATGAGCATAATTCGAG rev:(+)TCCAAAGGTCTACAGGAATG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm451 VISTA mouse element 451 same experiment
 EMAGE:24406 same experiment
 EMAGE:24408 same experiment
 EMAGE:24409 same experiment
 EMAGE:24410 same experiment
 EMAGE:24411 same experiment
Data SourceVISTA