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EMAGE:24444

mm612 VISTA mouse element 612
TS19 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24444 EMAGE:24444

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm612 - embryo 3.
Expression Pattern Description
Spatial Annotation:
EMAGE:24444Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24444_wholemount_strong.wlz
24444_wholemount_moderate.wlz
24444_wholemount_weak.wlz
24444_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24444_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
VISTA annotation: branchial arch (8 out of 11 embryos)
eye
detected detected
VISTA annotation: eye (11 out of 11 embryos)
forebrain
detected detected
VISTA annotation: forebrain (11 out of 11 embryos)
hindbrain
detected detected
VISTA annotation: hindbrain (rhombencephalon) (9 out of 11 embryos)
limb
detected detected
VISTA annotation: limb (10 out of 11 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (9 out of 11 embryos)
nose
detected detected
VISTA annotation: nose (4 out of 11 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm612 VISTA mouse element 612
Sequence:chr8:26653483-26656234  (UCSC mouse mm9 )
>mm612
CCTATGAGTGAACGTGATAGTGGAGATTGAAACAGAACCTCTAGAATTCCAATTAAGCCCTCCACCCCTA
AGGTGTCTCCCCAGCTGGGGGCATTTCTTCACGGCAGGGAATAACATGACGCTTTGTGAGAAGGCTATTT
GTCCACCCTGGATTGGGTGGTCTAATGCTGGGCTCTCTGACCTAAACACCCCCAGACTCATTGGCACGGT
GCGGACAGACCGCAGGCCACACGTAACCAAACCGTTTAACTCGGGCACCATCTGTGGTTTTTGGGGGGGG
GGGGGACAGAAGGCACATTCCGAAACAGCTGACACTCCTACTGGATGAATGGATCAGCAAGTTTTTTGGG
GACTGCAACTTTTCCTGCCCAGCTGCCGGCCTTTTCCTTCTCCAAACTGGAGCTTCGGAGCCTGGGGGGA
GGGGCGGCCCTAGAAGGCTCCTCCCCGGGCGGGCGCTTGGGGGCAGGGCAGTGCATTCCTTTCTTTAAGG
AACCTGACCAGACTTTAAGGTCAGGGCCTAGAGTAGAGCGGACTTCGGGAGTTACCTCTTCCCTGTAGAG
TCCTCTTATTCCCCCCTCCCCCTCCCCCATACTTAATGATCTTCCCATTACAGAACCCAGACCAGGAAGT
GTATGACAGGTCGCAGCTGCAGACACATGGCTGGGAGGCCTGGGCTCCCTGCCAGTAGTGGGAGGGTCCA
AGCTACCGCCCTAGCAACAGGACCACCACCCTCTCTCCTCCCCGCCCCACCCCCCTTCCTGGCCCACAAC
TTAGCAGAGCAGGCCTTAGGCTTTTCTCTATCATTCGGTGGCCAATTGTAGTTTCCGATTCGAATTGAGG
AAGTGACTTTGGGTGATGGGGGCTATGACAAGACTCACCTGCTTACAGCTTACGGCGCTAGGCTCTTCCA
AGAAGTCTGCAGCGACTTTAACCCAAAATTGAAGCCACCTAGTACAATCACAGAAGCTTCATAATGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGCAAGGGTATCCATAAGTCCTCTGGAGGACTA
CAACTCCCCAAACACGCTTTGCAAGTACATGATGGCATAGGCCCACGTTTTAGTCACAGAGCTCCAGTCC
CCCCACCCCCCCACCCCCATCCCCACTATGGGGATGGATCTTCTGACTTTAAGTTGCTCAGGAAATGTCA
GTGGACCCTAAACTGCCCTAGGAGGCAGTTGTCACACAGTTTTCTTCTGCTGCCAGCTGTGTGGTTGGCC
TCCTTCCCCGAATCTGCCATGGCTGCATTCTTCTGGTGCCAAGTGAGACATGGTGACTCCAACTCCTGGG
AGCCCTGAGCACAGACAGCCCTTCCTGGAGCTGCAGGGCATCCTCTTTTTGGGTTCTTTCTGGCCAGTAA
ACTAGGAGGAAGAGGAGCAATGGATTAAAGACCCAGTTGGGGAGAAGGGTACAGGAAGAGATTTGGGTTT
TTTTTTCGTGCTTGGTCCAGGTTTTTACCAGCAGAGCCAGAACCTTTGCTGGAGAAGAAGGGGGGATTTG
ATTCCTTTCTTAATCATGTAATTACAATCCTTCCAGCTGGACCGGGCTACGGTGGGAGTCGGGGGGGGGG
GGCACCAGGGCCTGGGCACCATAACGCCAGTGGGAAAACTACAGGCATGAAGTTTGTGTCCCGACTGAAC
ACAGTCCTGGTGCACACCTTTGTTGAAAGGTTTGTAAGGACGAAACAAAACTCCCAAGTAAGGGTTTCCC
TTGTTACCTCCTTGAGCCCAGCTGGGGAGGTGGGGGTGTCATGTGGTGGACGCAAGGACCCTAGCTAGCT
GCGGCTTTGGCAGCTCCGTACTAAATTACAGTGATGAGGTGGGGCGCACAAAAGACTGAAATCTTTTTTT
TTTTTTAATAAAAACAAAACAAAACTTCAGCCCCAAGCCCCTGGGCTCCTGAATGGCCGTGGCTTCCTGT
CAGGATTAGCTCGGCTGCCTGGGCATGTGTGTGCTGCCTTTCTCCTCAGGAAATACCTTTAGTAAGCCCG
GGTGGAGTCCCCATGGCAACGAGAGAGGGGACCTGCTGACAGAGGCCATTCAGCTCTCGTTGTTCCCTGG
CCTCTTTGTTGTGTGCTTCATCACGGCCCCTGTGGCAAGCACTGCGCTTTGCACCATTTTGTCAGCCCAA
TGTGGAGTTTTACATTTTAATGGGCTGTTCTGGCAACGGCCCATTTGCATGCAAAATGTTCCTTCTTGCT
CCTCTCCCTTTTTCCTATTTAAAAAAAAAAAAAAAAACCTGTCCAAACCCCCGTCAGGTCCCCAAATGCT
GCTGACCAGGAGAAAGGCCCCTGGTAATTGACTGGTGCTTCGGTTTTCGTTACCACAACACACCTTTGCT
CCCCCAGTTTTGCAGCCCTCCTTGTATTGAGGAGATCTCTGTGTCCCCTTCTCGGTGCCGGGTCCCTCGG
AGAGTGATGATTATCACCTGGGATCTTACTGTGATCGCTTGTTCTGTCTTGGTCTTGCTAGATGAAAGTT
AAGTTTTCGGTTCCATTTCAAAGTCAGAATAAGGTAATAAAAACCTCTGCTGAGGGCCCCTGGAGCCCCC
GCCGTGTTCCTTCTTAGTTTCTTTCAATGCCACCCCAAATTCCTCCCACATCCACAATTGCTCCCCACTT
ATCACTGGGAGCTTGTGCCAAGACTGTAAACATTCCCAGACCACCATCTCCCTCCTGTTGCTGAGACGAC
CCCCTCTCCCTTCATTTTCTTT
(Equivalent human sequence - chr8:38297574-38303698  (UCSC human hg19 ))
Flanking Genes:Fgfr1 (intragenic) (mouse)
Primers:Vector specific   fwd:(+)caccTGAGTGAACGTGATAGTGGA rev:(+)AAAGAAAATGAAGGGAGAGG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS19
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm612 VISTA mouse element 612 same experiment
 EMAGE:24442 same experiment
 EMAGE:24443 same experiment
 EMAGE:24445 same experiment
 EMAGE:24446 same experiment
 EMAGE:24447 same experiment
 EMAGE:24448 same experiment
 EMAGE:24449 same experiment
 EMAGE:24450 same experiment
 EMAGE:24451 same experiment
 EMAGE:24452 same experiment
Data SourceVISTA