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EMAGE:24476

mm642 VISTA mouse element 642
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24476

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm642 - embryo 4.
Expression Pattern Description
Spatial Annotation:
EMAGE:24476Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24476_wholemount_strong.wlz
24476_wholemount_moderate.wlz
24476_wholemount_weak.wlz
24476_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24476_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
VISTA annotation: branchial arch (6 out of 10 embryos)
dorsal root ganglion
detected detected
VISTA annotation: dorsal root ganglion (4 out of 10 embryos)
ear
detected detected
VISTA annotation: ear (6 out of 10 embryos)
eye
detected detected
VISTA annotation: eye (7 out of 10 embryos)
head mesenchyme
detected detected
VISTA annotation: facial mesenchyme (6 out of 10 embryos)
forebrain
detected detected
VISTA annotation: forebrain (5 out of 10 embryos)
heart
detected detected
VISTA annotation: heart (4 out of 10 embryos)
limb
detected detected
VISTA annotation: limb (3 out of 10 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (8 out of 10 embryos)
nose
detected detected
VISTA annotation: nose (5 out of 10 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm642 VISTA mouse element 642
Sequence:chr15:60684551-60685842  (UCSC mouse mm9 )
>mm642
GCACATACTCATATGCATGGGCACATGTGTGCATATGTATGCATGTGAGCACATGCGCGCGCGCACACGC
GTGAGCACACACAAACACACACACACACACACACACACACACACACACACACACCCTACTGTCAGTCTTC
TCTCTTAGGAAGGAATAAGGTGGGAGACTCAGAGAGGAAGACTCTTAAGTATCTCTCTGCTGATGTAGGA
AAATTCCAATAATTGCCATTTAGAATGTTGCCTGGGGTAAGACGAAGCTAAACACCTCATGCTGGAGCGA
GATAAAAGTTATCGCTATTGGACTTGACTGCAGTTTAACCCCAAGGTCACTAGGAGGCCAAAAGGAAGGG
AGGAATCCTGGTTTTAGAGCCAGCTCAGCCGGAGGCAAGTAAGTTCATCTGGCCTCTGTCTTCGTGTTCC
CACCTAGGAGTTTGGGAGCTGTGTCGGGCAGTACCAGCCCTGCACAAATCAGCTACGCTTTGGCCCCGGG
CAAGGGAGCAGAGCCTTCTGCCAGGCAGGAAATTAACTCCCTGTGTGACCTGTACTCCTCCTTGCCCACA
CCGCTTGTCTCCTCACTCACACAAAAGAGTCTTTCAGAACCTGGTTACCTCGAGCTGAACTCTTCAACAA
GGCTTGTTGTGTTTTGCCTTTAAGCTCCTCAGCAGAAATACCAGATTCTGCCGTTGCTAAGTTTAAGGAT
TTTTTTTCTTCTCTCTTCTCTTTGAGCTCGGTTTCTGTTGAGGAGGAAAAACCTAGAGATAGATTACTGT
TTCCTTAGCAAACGGGGAAGGGGGCGGGGTGTGCTTGAACCACTGGGGCACTTGGAAGGATTACCTATGA
TTCAGACTTCTGCTAATAGTCCCTCGTTACCAGTCCTGTTCAAGTCACACACATTTGTGTCGGTAACTAA
GGCCGACTGCAACCACTCAGCCCTAAGTGCACACAGAGGGACCATGAAGTTGGAATAAGCCATAATCTAA
CATGAATATTTATGTGTTGTTATGCCTTGGTCCAGTCGGCCTGTTTTCATTTCATGCATTTTCTTTCCAT
TTATGGTCCTTATTTATTGCAAAGACAGGGCTATTAGCAATATAATACATCAAGGTAGATTTTCTTTTTC
TGCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTAATA
TTTTTCCTGCTTTCTAATCTATCTCTGGGAAAGTATGCCAAGACGGCAGCACAACTTGCTGCCAAAATCT
AAGAGACTGGTGAATTTTGTTCCTGTGTTGGT
(Equivalent human sequence - chr8:127600703-127601834  (UCSC human hg19 ))
Flanking Genes:Fam84b - A1bg (mouse)
Primers:Vector specific   fwd:(+)GCACATACTCATATGCATGG rev:(+)caccACACAGGAACAAAATTCACC
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm642 VISTA mouse element 642 same experiment
 EMAGE:24473 same experiment
 EMAGE:24474 same experiment
 EMAGE:24475 same experiment
 EMAGE:24477 same experiment
 EMAGE:24478 same experiment
 EMAGE:24479 same experiment
 EMAGE:24480 same experiment
 EMAGE:24481 same experiment
Data SourceVISTA