Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:24579

mm383 VISTA mouse element 383
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24579 EMAGE:24579

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm383 - embryo 5.
Expression Pattern Description
Spatial Annotation:
EMAGE:24579Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24579_wholemount_strong.wlz
24579_wholemount_moderate.wlz
24579_wholemount_weak.wlz
24579_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24579_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
VISTA annotation: branchial arch (5 out of 6 embryos)
head mesenchyme
detected detected
VISTA annotation: facial mesenchyme (5 out of 6 embryos)
nose
detected detected
VISTA annotation: nose (5 out of 6 embryos)
mouse
detected detected
VISTA annotation: other (5 out of 6 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm383 VISTA mouse element 383
Sequence:chr16:15194506-15196209  (UCSC mouse mm9 )
>mm383
GGCAGAGTTGTGTTTCTGATCAGTTTGAGTGCATTTAGTTTTTTAGGCTCAGGGTTATTAAATGATAATA
CGGTGACAAAGATTTGGATAATGACAGGTAATAATGGGATAGCCCCTGCCTGGTGAGCCTCAGCAGCTGC
ACCTTCCAGGTTCTCAGAAAAAAGAGTAGTGCTCAGAAATGATGTCCTCAACATTGGCCCTGATTCTCCT
TCCTTCAGAGTAGTTGACGAAGTGTCTGGCTGCATGTGTACAATGGGGAGGCACTCATTAAATGTTCTTA
GATTAACCATACCTTCTTAGCATCAGAGTTTTGATCACATTCCCTTCCATACTAAAAGATCCTCCACACT
CAATATGTCCCCAGTGTCTTCTTACAAGGCCTAGGACTCAGGACCAGCCTCATCCAAGGTCACAGCTGCA
TGTCCAAGTCATACCTTTTCCCACTAAGTGGATATTACTGAAGCTCTGAGCTGCATTTCTACTCCATCTA
GCTAGTAAGTGTACTTGAACCTTAAAGAAATTATCTCTGGCTTTATTGTACTGCTGCCTTGAAACCATTT
TCTCTTCCTTCACTCTCTGTCTTCCCTCCCTTTAAGAACCTTCTCTCCTGGGAGGATATGACGAGGATCC
AGCTCTGGCCAGGCTCCCACAAAGACTTGGAAAGGGGCCTTCACAGAAGGTACTTGTCCCCTCCCTGGCT
TTCAGCACATACCCAGGAATGTCTGCCAAGCTCTTCTGTTTCATCTCTATTTTGTACATTAACACAAGTC
CAGCCATACATTTTGCCCATCCAGGATTTCACTCTGGGAAAGTGAAGATCCACTTGCACTACAGCAGAGG
AAGGGGTTAGGATCTTTCTAGGAGGCAGCAAAATCAAAAGGACTCAATGCTAAGTGTCCCTCAGAACATC
CTCTGATTTCCCAAGGCTGAAGGAAGGAATTATTCTGAAGGTATTAATAGAATGCAGATGTTGGAGAATG
TGGCTTTAAATTCTGCTGAACAAATGACCCTGTTGGGAGGTCGTTTCCAGTCTCCAGGGACATTCCACAG
AGGGCCCAGCTGATTGTCTCATATTGAAACAACATGTCCAAGACACATTCCAGCCTAAAGCAAGCGGAAC
AGGGCTACTCTGACCAAGTATAAATCATGAGGCAAAGGGCAACTACATCCCTCAGTGCTGCCCTCCTCCT
TCCTGGTTCCCTCCACCTCCTCCACCTACCCCCAAGGAAAACAGAGTTTGAGTAAGAGGCTGCCAAGCCA
GGCCGCTGAGGCGCCGGCTGGCTGGCAGCACACATGCTGCAGCTTGGGAAGCTTGCTTCTAGCTTTCCAT
GCTGTGGCCCTGATGGTTTTGCTTCAGTTCAGTTGCTCTTTGTTTCTGGTCTTCAGTCAAGTCCCAAACC
ACCAGGCTTCTCTAGAGAATTCAGTCTGACATTTTAAGAGTTAACACCAGAGCCCCCTGGACAGAAGGGC
AGATAAGAGAAATTCTGGTGGGAGATGGATGCCGGAAGAACAGGGTAGAGGATTTCTTTAGAAAGTGAAT
GTGTTACTTGTGAAAATATTAGCCATCCAATAAAAAGAATGAAGTGTCTTTCAAGAGACAGTTTGCCAAA
ATGGAAAGAAAGTCTTCTTTCAAAGACAGCCAGACCTGGCACTGTTTGGTGAGCTGTGTGTTCAGGACAG
ACACAAATTAGCTGGTTTAGGGTG
(Equivalent human sequence - chr8:49340594-49342188  (UCSC human hg19 ))
Flanking Genes:Efcab1 - Ube2v2 (mouse)
Primers:Vector specific   fwd:(+)GGCAGAGTTGTGTTTCTGAT rev:(+)caCCCTAAACCAGCTAATTTGT
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm383 VISTA mouse element 383 same experiment
 EMAGE:24576 same experiment
 EMAGE:24577 same experiment
 EMAGE:24578 same experiment
Data SourceVISTA