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EMAGE:24605

mm397 VISTA mouse element 397
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24605

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm397 - embryo 8.
Expression Pattern Description
Spatial Annotation:
EMAGE:24605Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24605_wholemount_strong.wlz
24605_wholemount_moderate.wlz
24605_wholemount_weak.wlz
24605_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24605_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
cardiovascular system
detected detected
VISTA annotation: blood vessels (12 out of 13 embryos)
limb
detected detected
VISTA annotation: limb (12 out of 13 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm397 VISTA mouse element 397
Sequence:chr5:93426293-93427320  (UCSC mouse mm9 )
>mm397
CAGCAGGAGTTTCTGGTGTTTTCCAAGCAGGGAAATGACATGACTGGATTACATTTCCAAAACAGCTTCT
CCGGACTTCATGGACAGTCCAAGATGATTCCAGAACTGTTTTTTTCCCCCAAATCTAAAACAAGCCTGGA
GTACTTTAAAGACCTTCTTAAGATGTTGCTCTGGGGCTATCTCATGTTCCTCCCCAGGGCTCCTCTGGAA
AGCAGAGCCCAGTGCAAATGGATTTGGAAAAGCCTCCTTCCGTCAGCTCCTGTGTTCATACCATCCCTTG
AGCACTAAGGGCCCACACATGTGCAGGCCACACTGCCCTCCAGTCAGCCTGTTTACTCAGGGATGGTTTT
GTTCTTCCAGCTTGCATACCTTGCAACAGCCTGTGCAACTTGCGCAGCCCTTTAAGTCTTGGAAGCAGCC
CTCATCTCCCAAGGAGAGTCTCTCCATCTCTGCTGGATATCTCCAATGCCTGCTGTGCAGGCTGTCTCAT
GTGGTTGGTTACACACTAGGAAGCAAGACTAGAAGGCTGTGCAGCAGAGGCCAGCCGAGTTCCCAGAGCC
TGGGCCTGCTAGGCTTATCCCCAAGAGATGAATTCCAGATGCTTTTCTTCCAGAGTCCTCCTCCTCTCCC
CTCCCCATTTCCTGTTGGGGCCCCCTCTCCCTGCAGCTCTCTCTCTCCAACCCCCAAGCCAAGCAAGACT
TAAAGTGGAAGACATCACTGTCACGTAGGAGAGTCGCTCCTCTGCAGGAAGCAGACTACAGGATGTGTCA
CCTCCTCTGGGATGCCTGGAGTAAACCACACAGTCCAGAGTTGCTCTGACCAGTTAATCCTGATGCCCCT
TTCTGTCCCTCACTTCCTTTTCCCACAGGAGTGAATGGCCTGAGGCTTTCCCCTTATTTCCTTGGTAGTT
TTTCAGACACTTTTGAAGCCTGTAAATAAACATGCTTTTGCAGAGGGGGTGGGAAGGGGCAGGAGGGGAA
AGAGTGGGCATGTTGACATGGGAGGGGCAGCAAGGATGAGATGACAGT
(Equivalent human sequence - chr4:77732780-77733943  (UCSC human hg19 ))
Flanking Genes:Shroom3 - Ankrd56 (mouse)
Primers:Vector specific   fwd:(+)cacCAGGAGTTTCTGGTGTTTTC rev:(+)ACTGTCATCTCATCCTTGCT
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm397 VISTA mouse element 397 same experiment
 EMAGE:24598 same experiment
 EMAGE:24599 same experiment
 EMAGE:24600 same experiment
 EMAGE:24601 same experiment
 EMAGE:24602 same experiment
 EMAGE:24603 same experiment
 EMAGE:24604 same experiment
 EMAGE:24606 same experiment
 EMAGE:24607 same experiment
 EMAGE:24608 same experiment
 EMAGE:24609 same experiment
Data SourceVISTA