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EMAGE:24619

mm402 VISTA mouse element 402
TS17 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24619

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm402 - embryo 6.
Expression Pattern Description
Spatial Annotation:
EMAGE:24619Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24619_wholemount_strong.wlz
24619_wholemount_moderate.wlz
24619_wholemount_weak.wlz
24619_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24619_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
VISTA annotation: branchial arch (6 out of 12 embryos)
forebrain
detected detected
VISTA annotation: forebrain (12 out of 12 embryos)
hindbrain
detected detected
VISTA annotation: hindbrain (rhombencephalon) (10 out of 12 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (12 out of 12 embryos)
future spinal cord
detected detected
VISTA annotation: neural tube (8 out of 12 embryos)
mouse
detected detected
VISTA annotation: other (8 out of 12 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm402 VISTA mouse element 402
Sequence:chr6:50771118-50773588  (UCSC mouse mm9 )
>mm402
ATCCAGAAAGTTCTCTGATTGCCTAGAGGAATGGGCTCCTGGCATTTTAACAACTGCAAGCATATTGAAT
TTTATTAGTCTAACCCCTTCTTTTTATAGATGAGGAAGCTAACGTGTAATCAAAAGTTAAAGCCACCCAA
CTGATTAACTACCTTGTTAAGGTTGAGATGTGGTCTTCAGATTCCCAGTGGTGCACATTTCCCATTAAGG
GAGTAGTAGACACGATGAACATAACTGGAGTGGTGACTGGCCTTGCTGCCGCCTCCTCCCCATCATTTTG
TGGGTGCGAGTCCCTCCGTAAGAAGAGAAGACACCAGCCTTCAGCATGTTATCACTATCGCCTGTTCTGA
CAGCACTCAGAGCCCTTGCTTTGAACTCTGCATTGCCATGGCAACGACTGCTCCTCACCAACAACATCAC
TGCCCAGATCCTCTGTGCTGAGGTGGATGGTTGCCAAGCAAATCATAGGAATTTTCTTTTCTTTCTTTCT
TTCTTTCTTTTTTTTTAAAGTCAAGAAGGCCGAAAGCCTCAGATCAAGTTCAAATTATTTGGAGGATGTG
TGTGTCAGGGACACTTAGCATCAGTTTCGATGGGGAGGCAGATAAAAGCGTGATTTAAGACATGGATGGG
AGAGAACTGGGCCGCCCGCCTCTTGAGCTCTGAGAGATCTTCCAGAGCCCCTTTGATGTGATGGAGACAT
GGAAGTTGCATAATTTTTGCCCCATCCAGACACAAAGGCTGCTCCAAGGAGCTTAAGCCTCCACCAAACA
TACTGAATGCCTCTTAAGCCCCCTTTCTCCCCAGCTCCCCCTCCCCTTCTTTGTTCCCAACATGCCAGGA
CCCAATGTGTAGGTTTTGTCTCAAGGAGGGGAGGACATTAGCGTCACAGGAGTAAATTTACAAGGTTGTT
GGGCTTGGGTGTAATAGGAGCTGTGAGGTCTTGCATCCATTAAGAGAGGTGGTCAAGGTTATGGTTGTAC
AGGCTAGTCCTGGGGCAGCCTCCGGCAAGCTCTGATTACATGGGACTGGAGAGATCCCATCTCAGAGAGA
GAAACACATGCCTTACAAATTGGTCACATCCCATTTAGCCCCTATTAATTTACATCCGACCCTCAGGGCT
GAGCAAGCAGAATTTCTCATCCCTTTGTCGCACCCCCAACTCCCCCCCACCCCCCGCCGGCAATCACCTC
CTTTCCTTTCTCTGACAGGACACTCTCAGCCTGACTGTTTCCACTTCTCTCAGGTTTCATTCCTCTTCTT
GGCTGTTGCGCTTGGCAACCCCCAGATCCTCTGCATTGTAAAGCCAGTGCTACGTGTAGCCCTCACAGCC
TGCTTTCCATCAGCTTTGCCTAAATCAAGTTGCCAGATCAGTCCCGTGTGTCAGCAGAGTAATAACTATC
TTCAGTGGGACGAAGGGATGCAGGAGAGCATTGCCTTTTCTGCTTCAAAGGCTCCAGTGATGCCTTTAAC
CACAAAAATGAGGATGGAAGGGAATAATAGTCAGGAGTCCCAAGATGGCAATCTCCCTGCTGGAAATGTT
CATGAATTACCTGTAATTTACCTCAAAATGGACCATATGTTGGACGGCATGATGCACTTTTCCCTTTTTC
CACCTCTAAACAGGCTTATTCCGAGCACTGTTTTCTCTTAATGTGGGACTAATGTGGGGAATGGATGGGG
GCGGCGGCTGGAAGCTTCGCAAATTAAAGTAGACACATTACCATCCTGGAGCTTTATACAAGGAAAGAAA
TGAGCTTTGTTCCCCCCGCTTAATATACCCTCAGCCCCAGAGGAGCAGGGTGAGAGGGTGGAAATGTGTT
GGGAACAGAGAGGGAGATGAGCCAGCAACTGAAGTTCCCTCCATCCCCTTCGCGGAGTAGGAGAGGCACT
GTGACCCACCTCCCCTTGGTGTATGTGGTCAGAAGCCTCAAGGGCGGCTCTGCTGAGACAGAGGAAGGGC
CCACAGGATATCTGAAGCGTTTGCCACATGCTCTTGCCCCCCCCACCCCCCACCCCCCGTTTTCAAAAGG
GTACCTGGTGGTTACTGAAAAGAAAACCTGTGAATGTTCCAGGATGCTCAGTTTCTTAATCCCTTGCAAG
CCGAACCCACACATAGGGAGAAGTGTCAACAATAGCCAGCCCTCCTTTCCACCCGGAGCCAGCCACGAGG
CCTTGTCACTAGCCACGCCACATCTGCGCTTTTTGAAGGGAAATGTCATAATATTGTTAATCAATAGGAA
GAGTGACAGGCCCATTTGTCACGAACAAGGCAGCACTGCAGCTGCTGTCCTCGCTGCATCTGTCTCCCGG
GCTTTGCTAAGGGAAGCCCCAGGAACGGCCTGATCAGTGTCTAGACAGCTCTGTTCTGTGCTGGGTCTTA
GGAGGGAGCTACTGGGCACAGGCAGTCACTCATCTTGCTGGTGCTCTGCACATTGGGCCTGGACAGGACA
GCAAGGGCTAGAGAGGAAACT
(Equivalent human sequence - chr7:25447351-25449985  (UCSC human hg19 ))
Flanking Genes:Npvf - Nfe2l3 (mouse)
Primers:Vector specific   fwd:(+)caCCAGAAAGTTCTCTGATTGC rev:(+)AGTTTCCTCTCTAGCCCTTG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS17
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm402 VISTA mouse element 402 same experiment
 EMAGE:24616 same experiment
 EMAGE:24617 same experiment
 EMAGE:24618 same experiment
 EMAGE:24620 same experiment
 EMAGE:24621 same experiment
 EMAGE:24622 same experiment
 EMAGE:24623 same experiment
Data SourceVISTA