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EMAGE:24654

mm414 VISTA mouse element 414
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24654

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm414 - embryo 2.
Expression Pattern Description
Spatial Annotation:
EMAGE:24654Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24654_wholemount_strong.wlz
24654_wholemount_moderate.wlz
24654_wholemount_weak.wlz
24654_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24654_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
VISTA annotation: branchial arch (17 out of 17 embryos)
eye
detected detected
VISTA annotation: eye (17 out of 17 embryos)
forebrain
detected detected
VISTA annotation: forebrain (8 out of 17 embryos)
limb
detected detected
VISTA annotation: limb (15 out of 17 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (17 out of 17 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm414 VISTA mouse element 414
Sequence:chr14:22932437-22935173  (UCSC mouse mm9 )
>mm414
TCCCCACTGAGTTGTTAGCTGTTCAGTCTAAGCTCAACTATGGAATATATTAAAAGCAAACTAAAAACAA
GTCAGTGTTTTGCCTCTAATGCTATGGGGATATTTGATTTTAAATCATCTTTTAGTACATCACAAATCTC
CCCCATGATGCTCCCTTCCTCACTCTCCCATTTTCTTTCCCCACCTTTTTTTTTATCAGAGACATTTTTC
TTCTTCCTTTTTTTTTTTTTTTTGTTTAGCGCAAAAGGCCATTTCTTAAGTCCTGATTTATTCTGAAATT
TACATGAGGAAAATGGCTCCAGATCCCACACAAGTGAAACTTTATTTTTTAATCTGGGCCACAGTAGGGA
GCCCTGAGAAACGCATTTTCCTCCAGGATCGGAGGAGGAATACATAGTGTTTGTTTAAAGCATCAGGTAT
TGAGAAATGCAACAGGGTGAAAAGTTTGACCCCAGCTGCCAGATCCGATCTGCTAGGGGTAATTGAGTTG
CCATGTTTTCTCCCTCTTCAGTTTAAATCAAGTTTTGCTATAGCCCATTTACGTGTCAAATTGGTAGCTA
AACTTGACAACTTCAGGGTGCAGACTTGCTTTTGATCAGAATTTACATGCAAATCATTTTTTGCCTTGAA
CTGTCAACTCTGATACTCTGAGGGGGACATGTCTGTCCCCAGCTTCTCTCTCTCCCCACCCCCACCCCAA
GCCAAAGGGGATGTTGGCTAATGTTATTAATCAGCATGTGGAAAAAAAATTATCTTGATAAATATGGTGG
CTAAACTATACTTTCCCTTTTGTGTGTCAGTTGTTGCAGCCGGGCATTTAATCTCCCTTTACCTAGAAGG
AAATCAGACAATTATCCAGCACTTGATGTCAAAAGGAAGCCCGAGAATGAAGGTGGAGGGTCCCAGTGTA
TTGGGGAATGGACTTAAGCCACCAAATCCCGACAAAGGGCCCTGACAGTCTGCATTTTCTTGGGCATTAA
ACAAAGTCTTTGGTAAGTTTAAAGAATCTTTCCCTGCATGACTAAACTCATTGAGAGGGTTAGAGAGAAA
GCTGCCTCAGAAGTCTTAAGCCTGAAAGGTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTGATTTT
GCCCTGAACCCTCGGGACCCTTAAAACACTTGAGCATGTGTTGTTCCATCCCTCAGCCAGACAAAGGGGT
GTTTGCGCTTCCAGAGAGTTAATAACGACAGGAGTAAGTCTTTCTGGTTTTTGGTTATTCTGTCTCCATC
CGCTACCTACCCAAATCATTTAACTGTGATTTACACACTGCCTGCCTCAGTTCTTCTGGACATCTGGGCT
CCAAGGAGCAAGAAAAGGCAAGGGCTCAAACAACCACCACAGCCCAAAGACAAATTTAGAAAACAGAAGC
TTCTAGAATATGCCAAAGATAAAGAGAGCCGGTTGAGAGTACTCAAGAGTTATCCATTGCAGAGCCCGAA
TGTCGAGTGTCATAATATTAGATTTTTGTTTCTAGTTGGCCTGAAATTCCGTTCCATCAGTGCACCCCCC
CTCCCTCATGGGGTGAGAACATCAAACGTGTTTTCTTGCCAGGATGACAGCCAGCATTGTGTCAGATGGG
AGACACATGTAAGCCTGACTTGAGAAGTGAAAAACATCTCAAGATTGGGTCGGTGTGATCGGACATGGCC
CCACTGCAGGTCTTTCTGGAACCTCCTGGGCCAGGCCCTTTCAGCCTCTGTCCAGCACTGCCTGCCTTGT
GTGCTGTGAAATTTTAATTGAATTGTTAATGACACCGAGGAGTGACACAACACACGAGGAACTTCCAAGA
ATCAGTCAGGAGGAGCCCCCTTTGCTCACTGTTACAAAACAGAAGACACTGGGAAATTGACAAGTCCAAG
CGGCGAGGCCAGGGTCGTAATTGATAGCAGGCTGTCTAAAGCCAAGGCCCTTCTTTGGTAATTGCAAGCA
GAGGCGCCTCTCTGATCTCACCAGAGGTGCTGGCCATGCCAGAGCGACCCGGCTTTGACGGATGGCCTTC
CCGAGGTAATGACTTCGGCATGTTCTCCCCCTCACATGAGGCTGTGTCCCTCCCACTGGAGAAAATGAGC
CGAGCATTTTGCTGCCTCTTAAACAGGCCCCTGTTAAAATAACTCTATTCTATTATATAAGCCCTGTAGT
GCCAGGGGCTAAATTTATATGGTTATAAACAAGAGATATTACTTTGGAATACCACAATACTGTGTTTTGC
TCTTTCTTGAGGATTTCAAATGGTGTTTTCAAAATAATGGATTTTACTTCACGAAGAAAAGAATGAGGGG
CGTGTAGGAGGCAGAAGGCAGGAACTCGTTTCCGAATCAAACCTTCATCCTAGTTTGAAATTCCTCTGTG
TACCTTCCCTAATTCACTTGCCCAGTATTTATTTGTATTTGTGTTTGTTTTGCTGGCTGCATTTGACTCT
CTTTGGGAGCATCAGAAATATTATTTACTCCAGGACCCTGAAATAAGATAGATATTTTATTTCATGGTTT
TTACACTCCTCAAAGGTTTCTTTTTATTCCCCTCCCCTATCCATTTTTGGACATTGATATATTTCAGAAC
TTTTATGTGGCTTTCCCTCCCTCCATCTCCGCTCCCTTCCCCCATCTCTCTTCCTGGAATGTAATTTTGT
CTGTGAAATATGACTGTAAGCTCAAGTGTCCCTGATGATCTATAGTACTTCTGGATTTTCACTCTGTTGG
TGACAGA
(Equivalent human sequence - chr10:77301010-77303664  (UCSC human hg19 ))
Flanking Genes:1700112E06Rik (intragenic) (mouse)
Primers:Vector specific   fwd:(+)caCCCACTGAGTTGTTAGCTGT rev:(+)TCTGTCACCAACAGAGTGAA
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm414 VISTA mouse element 414 same experiment
 EMAGE:24653 same experiment
 EMAGE:24655 same experiment
 EMAGE:24656 same experiment
 EMAGE:24657 same experiment
 EMAGE:24658 same experiment
 EMAGE:24659 same experiment
 EMAGE:24660 same experiment
Data SourceVISTA