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EMAGE:24666

mm418 VISTA mouse element 418
TS18 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24666 EMAGE:24666

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm418 - embryo 2.
Expression Pattern Description
Spatial Annotation:
EMAGE:24666Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24666_wholemount_strong.wlz
24666_wholemount_moderate.wlz
24666_wholemount_weak.wlz
24666_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24666_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
mouse
detected detected
VISTA annotation: other (11 out of 15 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm418 VISTA mouse element 418
Sequence:chr2:4218373-4222502  (UCSC mouse mm9 )
>mm418
GTTCCTGATCCTTCCTCTTCGTCCCATCCTCGCTCAGCCTCCCTCACTTCCCAGTCAACTCTTAGTACAT
TGTCGACACTGGTCCTGAACCCACTGCTTCACAGAGCCTTTCCCATTCTGCCCTCGTCCCTGCTGTGTGG
CTCTTTATCCTCTCCCTGTCACTTGGCTGGCAGAGGACTGTGTAAAACTGGAGGCTGTCACTCATCCTTG
TCCCTCCCCTTGGCTCCATCAGTGCCTTATGTGGAACTTGTCTTGGAATCCACAAGGCCCTGGCCTACCG
TAGGTGACCTGTCTCTGAGCACTTCTTACTCAACCCCTCTTTGAGTCCCTGAAGCAGGGTCTCACTGCCC
CATCTCCATCTCTTTTGGACTGTCGGTGGCCTAGAGTCAAGCCTGGGTGACATGCCAGCAGCAGATCCAG
AGACTTTGAAACTGCCCATCTAACCAATCCTGTAGCAGGCAGCTTCTGTAAGGCCATTAAGAGGGTCTCC
TTTCTAGACTCTGAAACTGCTGGATGCCCTGTGATGGGTGACCATAGAATAGGCCAAGTTGGACCCCGCA
GTTACACAAAGTTACTTTGGTTTACAGTTGAGTTCTGACCTGCCCATCTGTATACTCTGCTCACCTTACT
CAAACAGGAAGGCTGTTTCTTCACCAGTTAAACACAAACAATGGAAGCCATTTGGTTCATTGAGGGTAGC
CTTTGGAAACCTCCCAGCCCGGTGTCTGGTAACTAAGCAAGCATCCATCCAGTCTCCTCCCCTCAAGTGG
TCATATCAGTATGAGTGTCTGTCCCCTCCTGGGAAACATACCTGTGTTTTAATAATGAAAATAAGTAATG
GATAATAACGCTGTAGATTCCGTAGGGAACCTGAAATGCAGGGTCTCAGAATTCCATGGATAGACTATCA
GATACTTCTGGGCAAACTGACTACTCAGAACCGTGAGGTCATAAGGAAGAGCTGAACATTTATTCTCCAG
GGGCTGGGGAGAGCTTCCTAAGTGGGAGGAAACTTTTCTACTTATAGAAAGCATGACCGTGCCCCCGCCA
CATTGGGGAGGGGGTGGAATGTGCTGGGCCTCAATGTGTGCGGAGTCTGGCTCAGGGTTATTTTGATTTC
CATTAACATTCTCTTCTATACGTATTTAACCATAATTGAACACATGTGCTTCTGTTTTATTTGCACTCAG
TTCATCAAAGTGTCCCTTACAAGTCTGAACTATACCACCAGAGCCTCTAGTTTTTCAGCGAAACCCCCAC
TAATACCCCTGGGAAACAGGAAGTTGCATTTACTGAAATATAAATAAATTCAGCTCCCAAGGGCTTTGCC
GGGGCTGGGGTCACAGGAGAGGCAACCATGTACTGTATTCTCTCAGAACACAACCCTGGAAGAACAAAAC
CCTGTAACTCCGGACATATAAGTGTTTGCATCCATCCTTTGTTCAAAGCTGTGACACCTTCTAGTGTGAT
TGTGGAAAATCAAGAGACCCTACAGACTGGGGTGAATGTCTGAGTATCGGTGCAGATGTAGCCTCTGCTC
TGGGGACAAATGACATGTAACCTGAAACCTCTCTCCAAAGATATCCAAGGGCTCCTTCTCTCGCAGCCTC
TCCCCTCTCGCTCACCCTCTGCTCGCCCCAACCGCACACATGGAACCAATTATGAACAAAGCCTGATTGT
TGTACACTCGGACTTTCCCACGTGGGCCCGCTGCTTTCTTTAACTGCCTCTTAGTGTGTGTCTGCGTGGG
AGGACCCTGCCCACCGTTCGTTCCAGCCCAGCACCACAGCTTCCCAGTCCTCCAGGTCTCTCTGCTCTGA
TTCATTCCTTAACAGCATAAAACCTCTCTTCCCTTCCCGCCCACCCCCATTTCCTATTAGGTTTGTCTGA
ATAAACAGAACTTTCTTTTCCATCACTCTAAATAAACTGAGCTCAGGGGTTTGTGGAGAATAAAGAAAAG
CTAGTTCCCAGCATGGGAGCAACATCAGGCTAAGCCTGGGATCCCCTCAGAGGAAGTGACCGTCACTTCA
TGAAAACCAGGGCAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG
AGTGTGTATGAGTGTATGTGAATGTGAGTGTATGAGTATGTGTATGTATGAGTGTGTGTGTAGAACTTTT
TTCTTTTCCTCAAGAGAAGCAAACAAAAATTCCATTACTTGTGACCTTTCTCTGCAATGGAAGTGAGCTG
ATTTGAGGAGGTGAATTGATAGGAATGGGGTGGGGGTGTTAACTGGCGATGTAGCCATTACAAATGCTAT
AGAATGTTAAAACTATAGCCTACTTGAACCACCTGTTGAAATGCCACCTTAATCAGAAAAGAATCGGCTG
ATGTGGCAGATGTGGATGAAGCTGCGCTTGAGTCTTCTCAAAGCTTTGTGAAACCACACGTGACTTAGTC
CTGCTCGCTAGCAGGCATAAAAAGCGAATGTCCTAGAGCAAATGTGGCGTCTCAGCAGGTGAGGGCACTT
GCCACCAAACCTGAAGATTTGTGTTTGGTCCCCCGGACTGACGGCTAGAAGGAGAAAACTGATTCCCGGG
TATTGTCCTCTGACCGCACCACTACTGGGGAGTTCCCCAAGCCGACACCCCCATGCACACAGGCACACAA
AATAAAAAAATAATGTAAAAAATTTAAACAAACAAACAAAAAACAACATTCTAAGCACATTTGCACAAGG
TGGGGCACACACAACAACTTTGGTCTGATTCATCTGAACCATGCATACAAAGGTAGCAAAGACAGGTTTC
TTTCTCCCACCACAACCCCCACCTCCCTTCCTGTGGACTGCATTCATATAATTAATTTGATGCGTACATT
TATTTTCTGTTGGAGGCACTAGTGGGAAAAAACATTCGTGTCTGATGTTCAGTTTCATAGAGGTAATTTA
TGAATCCAAAGAGACCCTCAATCCTCCTGTGTATTGTTCCTAGTCTTCAAATATTTTTTAATGTTTAGAA
GAGAATGAAATCAGAATGCAGGATTTTGAATTAATCTCTGCTGCAGATGTAGGGGAGATTCCACTTAGTC
CTTTTAAGGGAAGCACGTGACCTACTGTACAGCCGAGGGGCTTGGGCATCACGTGGTGGGGTGAATAATG
CGTCCGATACTCCCTTGATGAGACAACTGACCTGGTTGCCATCCGAAGCCCGGAGAAGCCAAGTTGACAT
TTCTGGATCATTCTCCTCACAAGCACCACGTACCCACTCCTGGGGCAGCAGGTCACGCTGAGCCAGAGCT
GCAGGGACAGCTAGAAGGAAGCTGAAGGCGCTGCTTCACACAGCTGAAGTTGGAGAACTTGGGCTGTTTT
CCTTTCTCCCCCATCCCCCACCTCCTGACCAACCACATCTTAATTCACTGGGCAGAAAACGCTTTCAGCG
TTTAGATATTTGGGAAACCTCTCCAGAAGACCACAGTTTAGCTCTGAGAAGGACGCTAGCTAGTCTCTCT
TTGCTACTAGCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACGA
TCACTCCCAGCTCCACACCATGGTAGTTCAGACTGCCGTGACTCCAAACAGACCTCAGAGACTTCTGAAA
ATACCTTATGGATCTCTGAGAAGGCGCAGCGTGGAGAGGGTAAGCTACGTGGCTGTAGTCGGCTGTTTGT
TTTCATTAAGCAGTTGCTACAGACTAGAGATGCTGGTTTACATTGTGCTACTGCTACTGATGTTGCTACT
GATGTTTTTCCTGGGCAATAGGGGAACTTCCTGCGGCTGCAGATACGATTCTATTTTCTATATGGTGATG
TTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCC
CTCTCCCTCTCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTGAACAAATAAGGCTGAGAATTCTGAAATGGAAATGTCTGTCAGTTGCAGATGCCAGAGGA
AAGATGAAATGGGAAGGTAGAGCCGTCTGTCCCCGTGGAGCTTGTTAAGAAGTGTGTCAGGGCTTAGAGC
(Equivalent human sequence - chr10:14049725-14054057  (UCSC human hg19 ))
Flanking Genes:Frmd4a (intragenic) (mouse)
Primers:Vector specific   fwd:(+)GTTCCTGATCCTTCCTCTTC rev:(+)caccTAAGCCCTGACACACTTCTT
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS18
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm418 VISTA mouse element 418 same experiment
 EMAGE:24665 same experiment
 EMAGE:24667 same experiment
 EMAGE:24668 same experiment
Data SourceVISTA