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EMAGE:29292

Clec7a C-type lectin domain family 7, member a ( MGI:1861431)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4722
Entity Detected:Clec7a, C-type lectin domain family 7, member a ( MGI:1861431)
Sequence:sense strand is shown

>T4722
CCACGCGTCCGCTTAGTGAGCCTCATCCTGGCAGTTATTTTACTAGTAAAGAACATTCAAGTGCTCTGCC
TACCTAGGGCCCTGTGAAGCAATGAAATATCACTCTCATATAGAGAATCTGGATGAAGATGGATATACTC
AATTAGACTTCAGCACTCAAGACATCCATAAAAGGCCCAGGGGATCAGAGAAAGGAAGCCGGGCTCCATC
TTCACCTTGGAGGCCCATTGCAGTGGGTTTAGGAATCCTGTGCTTTGTGGTAGTAGTGGTTGCTGCAGTG
CTAGGTGCCCTAGCATTTTGGAGACACAATTCAGGGAGAAATCCAGAAGAGAAAGACAACTTCCCATCAA
GAAATAAAGAGAACCACAAGCCCACAGAATCATCTTTAGATGAGAAGGTGGCTCCCTCCAAGGCATCCCA
AACTACAGGAGGTTTTTCTCAGCCTTGCCTTCCTAATTGGACCATGCATGGGAAGAGCTGTTACCTATTT
AGCTTCTCAGGAAATTCCTGGTATGGAAGTAAGAGACACTGCTCCCAGCTAGGTGCTCATCTACTGAAGA
TAGACAACTCAAAAGAATTTGAGTTCATTGAAAGCCAAACATCATCTCACCATATTACTGCATTTTGGAT
AGGCCTTTCCCGCAATCAGAGTGAAGGGCCATGGTTCTGGGAGGATGGATCAGCATTCTTCCCCAACTCG
TTTCAAGTCAGAAATACAGCTCCCCAGGAAAGCTTACTGCACAATTGTGTATGGATTCATGGATCAGAGG
TCTACAACCAAATCTGCAATACTTCTTCATACAGTATCTGTGAGAAGGAACTGTAAATGTATGTGAGAAT
ATAAAGATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCACACACACCACCACCACCACCACTACC
AACAACAGAACAGAACAGAACAGAACAGAACAGAACAGATTAATATTAAAAAACAGAGAAAATGCTGGGA
TGCTAAGAGACTTTAACCTCAGTTGAGAACTTGGATGAAGAAGCTGAGACTTTTGTACTTGTCATCTTCA
CAAAGATGGTGGCACTATCTTCCAGTTAGGAAGTCACTAGACATGGAGTGAGGGCAGCTCAAAAATACAG
AGAATATGTGAACCTGAGGTACCCTGACTCAAATTTCACAACCACAATGAAACCCCTACACTATCAGGAA
ACACTGTAGAGGAGTGAGACTGAAGACTTTAAAAGCCAGAGAATCAGCCTACTTACTGTGGTGTTTTCTA
GACAGGACAGGGAAAGTATATCTAGGAAATAAAAACAATACAATTCAGCAAACAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5036647 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5036647 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002996 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS