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EMAGE:29322

Slc7a9 solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 ( MGI:1353656)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7485
Entity Detected:Slc7a9, solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 ( MGI:1353656)
Sequence:sense strand is shown

>T7485
TGGTGGTCAGCTGAGAGAGTATCACCGACTCAGACAGAGTCTTTCTATGTACCCCAATTTGGCTTGACTT
GCTGGGTAACCCAGGCTGGCCTTGAACTTACTATTTCCTACCTCAGCTACCTCGGTACTGGGAGTACAGC
TGACTCAAGAGACTCTCCTCTCAGCCCCTGGAGCTACCAGCGGGCAACCATGGAGGAGACAAGCCTGAGG
AGACGGAGAGAGGATGAGAAATCCACCCACAGTACTGAACTCAAGACCACAAGTCTCCAGAAAGAGGTGG
GTCTTCTCAGTGGCATCTGTATCATTGTGGGCACCATCATCGGCTCCGGGATCTTCATCTCCCCCAAGTC
TGTGCTGGCCAACACAGAATCCGTGGGGCCCTGTCTCATCATATGGGCCGCCTGTGGAATCCTGGCTACA
CTGGGCGCCCTGTGCTTTGCAGAGCTTGGCACAATGATTACCAAGTCAGGGGGTGAGTACCCCTATCTGA
TGGAGGCCTTTGGCCCCATCCCTGCCTACCTCTTCTCCTGGACCAGCCTGATCGTCATGAAGCCCTCATC
CTTCGCCATCATCTGCCTCAGCTTTTCAGAGTATGTGTGTGCAGCCTTTTACTCAGGTTGCAAGCCTCCT
GCTGTGGTAGTGAAACTCCTGGCTGCTGCTGCCATCTTGTTTATCACGACAGTGAATGCGCTAAGCGTGC
GGCTTGGCAGCTATGTCCAGAATGTCTTCACGGCAGCCAAGATGGTGATCGTGGCCATCATCATCATCAG
CGGACTGGTCTTCCTGGCCCAAGGAAATGTAAAGAACTTTCAGAATTCTTTTGAGGGTACACAGACCTCT
GTGGGTGCCATCAGTCTGGCATTTTACAATGGACTCTGGGCCTACGATGGTTGGAACCAACTCAACTATA
TCACTGAAGAGCTTAGAAACCCTTACAGAAACCTGCCCATGGCCATTGTCATTGGGATTCCTCTGGTGAC
TGTATGCTACATCCTCATGAATATTGCCTACTTCACAGTGATGACCCCAACGGAGCTCTTGCAGTCCCAG
GCTGTGGCTGTGACCTTCGGAGACCGTGTTCTCTATCCAGCATCTTGGGTAGTCCCACTTTTTGTGGCAT
TTTCAACCATCGGTGCTGCTAATGGTACCTGCTTTACAGCCGGCAGGCTCATCTATGTGGCAGGCCGGGA
AGGCCACATGCTTAAAGTGCTCTCCTACATCAGTGTCAAGCGCCTCACGCCAGCCCCTGCCCTCATATTT
TATGGTATAATAGCCATCATTTACATCATCCCTGGGGACATCAACTCCTTAGTCAATTATTTCAGTTTTG
CTGCATGGCTGTTTTATGGTATGACAATCCTAGGACTCGTTGTGATGCGATTCACAAGGAAAGATCTAGA
GAGGCCCATCAAGGTGCCCCTCTTCATCCCTATCATTGTGATTCTCGTATCTCTTTTCTTGATCCTGGCT
CCAATCATCAGTGAGCCGGCCTGGGAGTATCTCTACTGTGTGTTGTTCATACTGAGTGGACTTATATTTT
ACTTCCTTTTTGTCTACTACAAGTTCGGATGGGCCCAGAGAATCTCCAGGCCGGTCACAAAGCACCTGCA
GATGCTCATGGAAGTCGTCCCACCAGAAAAGGACCCAGAGTAAAAGGTCCATCACTCGTAGCCCAAAGCT
GTGATCAATTTATTTTTGTAAGCAATTATTTGTGGTTATTTCTTCCTGGTGTTTTTCTTAATGAAAACAT
GTATTCAGATAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4236578 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4236578 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006096 same experiment
 EMAGE:31858 same embryo
 EMAGE:29252 same embryo
 EMAGE:29476 same embryo
 EMAGE:29575 same embryo
 EMAGE:30895 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS