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EMAGE:29444

Clcnka chloride channel Ka ( MGI:1329026)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29444 EMAGE:29444 EMAGE:29444 EMAGE:29444 EMAGE:29444
euxassay_001554_01 euxassay_001554_02 euxassay_001554_03 euxassay_001554_04 euxassay_001554_05
EMAGE:29444 EMAGE:29444 EMAGE:29444 EMAGE:29444 EMAGE:29444
euxassay_001554_06 euxassay_001554_07 euxassay_001554_08 euxassay_001554_09 euxassay_001554_10
EMAGE:29444 EMAGE:29444 EMAGE:29444 EMAGE:29444 EMAGE:29444
euxassay_001554_11 euxassay_001554_12 euxassay_001554_13 euxassay_001554_14 euxassay_001554_15
EMAGE:29444 EMAGE:29444 EMAGE:29444 EMAGE:29444
euxassay_001554_16 euxassay_001554_17 euxassay_001554_18 euxassay_001554_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4760
Entity Detected:Clcnka, chloride channel Ka ( MGI:1329026)
Sequence:sense strand is shown

>T4760
CCACGCGTCCGAGAAGCACCAGCCAGGCAGGACCTCTACAGGGTGGACCGGGAGGACGGATGGAAGAGCT
GGTGGGGCTGCGTGAGGGCTCCTCCGGGAAGCCGGTGACTCTGCAAGAGCTATGGGGTCCGTGTCCACGC
ATCCGCCGAGGCATCAGAGGGGGCCTAGAGTGGCTGAAAGAGCGGCTGTTCCGTGCGCGTGAGGACTGGT
ACTTCCTGGTGGCTCTTGGGGTGCTCATGGCTCTGATCAGCTATGCCATGAACTTTGCTATCGGGCGTGT
GGTCAGAGCACACAAGTGGCTGTACAGAGAAGTTGGGGACGGCCACCTGCTCCGGTACCTCTCCTGGACC
GTGTACCCCGTAGCTCTTCTGTCCTTCTCCTCCGGCTTCTCACAGAGCATTACGCCCTTCTCTGGAGGGT
CTGGACTCCCAGAGCTGAAGACCATGCTGTCTGGAGTAGTCCTGGAGAACTACCTAGACATCAAGAACTT
CGGGGCCAAGGTGGTGGGCCTCTCCTGCACCCTGGCCACAGGCAGCACCATCTTCCTAGGCAAAGTGGGC
CCGTTCGTGCACCTGAGTGTGATGATTTCTGCTTATCTGGGCCGCGTGCGCGCCAAAGCCGTCGGGGATA
CTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCTGCAGCGGCGGTGGGCGTGGCCACAGTCTTCGC
TGCCCCCTTCAGTGGTGTCCTGTTCAGCATTGAGGTCATGTCCTCTCACTTCTCCGTCTGGAATTACTGG
AGGGGCTTCTTCGCTGCCACCTGCGGGGCCTTCATGTTCCGTCTCCTTGCAGTCTTCAACAGTGAACAGG
AGACCATCACCTCCATCTACAAGACCAGATTCCGAGTGGATGTGCCCTTTGACCTGCCTGAAATCTTCTT
CTTTGTGGCTCTGGGGTTCATCTGCGGGATCCTCAGTTGCGTTTACCTGTTCTGTCAGCGAAATTTTCTC
CGTTTCATCAAGACCAATCGCTACACCTCCAAACTGCTGGCTACAAGCAAGCCGTCCTATGCAGCTCTGG
TCGCGCTGGTCCTGGCCTCAGTCACCTATCCCCCTGGTGTGGGCCGTTTCATGGCTTCCCGGCTGTCCAT
GGCGGAACACTTGCACTCTCTGTTTGACAACAACTCATGGGCATTGATGACTTGGAATGCGTCCCCACCC
TGGCCTGCTGAGCCTGACCCCCAGAACCTGTGGTTTGAATGGTACCACCCGCGGTTCACCATCTTTGGGA
CGCTGGCCTTCTTCCTGATCATGAAGTTCTGGATGCTGATTCTGGCCACCACGATCCCCATGCCTGCTGG
CTACTTCATGCCTATATTCATCATCGGAGCTGCCATCGGGCGCCTCTTGGGAGAGGCCCTGTCTGTCGCT
TTCCCAGAGGGCATTGTGGCTGGCGGAGAGGTCTATCCCATCATGCCTGGGGGCTATGCTCTGGCAGGTG
CTGCTGCCTTCTCCGGAGCAGTGACCCACACCATCTCCACAGCGCTGCTGGCCTTTGAGCTGACTGGCCA
GATCGTTCACGCACTGCCTGTGCTGATGGCTGTGCTGGCGGCCAATGTCATCTCCCAAAACTTACAGCCC
TCTTTCTACGATGGCACCATCATGGCCAAGAAACTGCCGTACCTGCCGTGGATCCGTGGCCGACAGATTG
GCTCCTACCCTGTAACGGTGGAACATTTCATGAATTCTAACCTCACCACACTGGCCAAGGACATGCCCCT
GGAGGAGGTGGTCAAGGTGGTGACCTCCACAGATGTGTCTCAGTATCCCTTGGTGGAGACCAGAGAGTCT
CAGACCCTGGTGGGCATTGTGGAAAGGACCCACTTGGTGCAAGCCCTTCAGACCCAGCCAGCTTCCTGGG
CTCCAGGCCAAGAGCGATTTCTCCAGGACATCTTGGCTGGTGGCTGCCCCACACAGCCAGTGACCCTGCA
GCTGTCCCCAGAGACCTCCCTATATCAGGCACACAGGCTCTTTGAGCTGCTGACCCTTCAGGCGCTGTTC
GTGACGTCACGGGGCAGAGCTGTGGGCTCTGTGTCCTGGGTGGAGCTGAAGAAAGCCATTTCCACCTTGA
TCAACCCACCAGCCCCCAAGTGAGTCGTGTGGGGGTCGGAACAGGAACCCAGCTGAGGGCTCCAGATGCT
GCACAGAGCCCTGCCCCTTTTCCCTCCCTCCCTGCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCA
GCCAGCTCTACCCAGCTGAACAGGGCTCCACATTTATCACGGCCCCCCGAGAGGACAACATCTCTCTGGT
CTGGAAGGGACAAATCTCACCCCGGTGGACGGGACGTACCTTCTGGGATTATCTATTCACAACCATTAGC
TCCTGAGAAAATAAAACTAAAGCTGATTCCCAGAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5042736 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5042736 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_001554 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS