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EMAGE:29552

V1ra1 ( MGI:1333759)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29552
euxassay_004664_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7695
Entity Detected:V1ra1, ( MGI:1333759)
Sequence:sense strand is shown

>T7695
GACTCCACCTGCCCCACCCCTTCCATCTGAACAGGCTTTCTCTGTGTAGCCCTGAATGTCCTTGGAACTC
ACTATGCAGACCAGTTAGGTCTTGAACTCAAACATCCACAACCTCTGCTTTTGACGTGCTGGAATTAAGA
GCACAAACATGAGGCACTGCATGGGAGAACCAGCAGGTGAAATATCTGCAGAGACCATCTTGTACTGGAA
CACTGCCATGTTCGGTGTGTAAAGAGCATGCTCTTGAATACCTAGTGTCCACCTGATACAAGCACATGGC
TGTGTATATGTTCAGGAGGAGCTGACTGGAGCTCAGCCTCAGAGTATTCTGGGTCATACTTGGTTAAAAT
GGCAGATTTGGGTGGAAGGTGAAATGTCTGGATTCACAGATCACAATTCACAACAGTTGCTATAAAAATA
TATTAAGAAATTTGGTTTTATAAAAAATTGAGTAAAGATAGCTCCAACTAGAATAAGTGCATACCCAATA
CACAGGACCTCTTTCATTGGGAAGGACTGGTTTCTTTCACAAAATCCTCCTCATTCAAACTCACCCAACA
TAGTAAAACTGTCTATAACGTTTCTGGAAGTGAGGATGTTGTGGATGAAAACCAAGCAAGATGCTGTTCC
TGCTCCAGGAAAACCCACACATGCTAAATAAGAAAAGACATAATCTATTATGTGTGCAGTATTTAATGTT
GAAGGAGCTCACACACTGATGCAGCCACCATAGGACACAGGATCCAGCCATGGCTCAGCTTAGGACAGGT
GAGATGATCTGTAGGGTGTGAGGTGGAGTTGAGGTCTTCAGTGGAATATGATGAGGGGAGCAGAGTTGCC
AGGAGTTATGAATGAGATTCTGTTCTTTTCTCCTCAGCCACTGTTCTCACATATGATGAATGAGAACAGC
AGGGTACACACTCATTCTAACTTAAGGCACATCTTTTTCTCCGAAATTGGCATTGGGATCTCAGGCAATA
GCTTCCTTCTTCTCTTCCACATCCTCAAGTTCATTCATGGGCACAGGTCCAGACTCTCTGACCTGCCCAT
TGGTCTCTTGTCCCTAATCCACCTACTAATGCTACTGGTCATGGCATTCATAGCCACAGACATTTTTATT
TCTTGGAGGGGTTGGGATGACATCATATGTAAATTCCTTGTGTACCTGTACAGAGTTTTGAGGGGTCTCT
CCCTTTGTACCACCAGCATGTTGAGTGTCCTCCAGGCCATCATCCTCAGTCCCAGAAGCTCCTGTTTAGC
AAAGTTCAAGCGTAAATCTCTCCATCATATCTCATGTGCCATTCTTTTCCTGAGTGTCCTCTATATGTTA
ATTGGCAGTCAACTCTTGGTATCCATCATTGCCACCCCAAATTTAACCACAAATGACTTTATTTATGTTA
CTCAGTCCTGCTCTATTCTACCCTTGAGTTACGTCATGCAAAGCATGTTTTCTACTCTACTGGTCATCAG
GGATGTCTTTCTTATTAGTCTCATGGTTCTCTCAACTTGGTACATGGTAGCCCTCTTGTGTAGGCACAGG
AAAAAGACCCAGCATCTGCAAGGTATCAGCCTTTCCCCCAAAACATCCCCAAAGCAAAGAGCTACCCAGA
CCCTCCTGATGCTCATGAGCTTCTTTGTGCTGATGACCATCTATGACACTATTGTCTCCTGCTCAAGAAC
TATGTTCCTGAATGATCCAACATCTTACAATATGCAAATCTTTGTGGTGCACATCTATGCCACAGTAAGC
CCTTTTGTGTTTATGAGCACTGAAAAACATATAGTTAACTGTTTGAGGTCTGTATGAGAGAGGATAATAA
ATGTTTGAATATTCTGTATGAGAGAGGATGATACATGTTTGAATATTCTTTCTTAAGTAAGATCCTTAGG
AAGAGCTAATGGGCTGGCATCAGAACTATCAGTCATGGCATGCTGTCAATGTGCTTTGCCAAATGTGAAA
TATAAAGCTGTTTTTCTGTCAAAATTATTTATTTTAAACAACATGATGGTAAAAATGTAACAGAACATTT
AACAATACACTTTAAGATATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6306893 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6306893 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004664 same experiment
 EMAGE:29394 same embryo
 EMAGE:31156 same embryo
 EMAGE:29368 same embryo
 EMAGE:29873 same embryo
 EMAGE:29625 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS