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EMAGE:29629

Cyhr1 ( MGI:1859320)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29629
euxassay_006572_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6739
Entity Detected:Cyhr1, ( MGI:1859320)
Sequence:sense strand is shown

>T6739
GCGCTTCGCAATGCCAGTGCTCCAGCAAACCCGTGCCGAAGATCATGGGCTGTGACGCATGCCTTTAATC
CCAACGCTCAGAAGGCAGAGACAGGCAAATCTCAGTGAGTCTGAGGCCAGCCTGGTCTATACAGGAAGTT
CCAGGACAGCCAGGGTGAGTCCAGTGACCTCAGGGCTCCAAAAAGTTTGGAACTGAATCTCTTCTAATGT
CTACTCAAAGGTCTCTGGAACTCGAGGTTCCTGAAGAGCTCCACTAAGGACTCCAGATCGCCAGCCTCTG
TGTGTACTTCTCTCCTAATTTGAAGATTCATTTCCTATCTCCTCAAACTCACTACTATTCAACGTGTCAT
GGTTTCCAAACCCAGGACTGAATGGAGCACTGTCCTGTCCCACCTGGTATTGGCAGGGGTGTCCCTGCAT
GCAGCGGTGAGCTCTGTACAGTCCAGTCGAGGAGCAGCTGCCGGCTTCCTGCTCCAGACCTTTGCTGCCA
TCATTATGTTGGCCCCAGGGCCGAGCACACATGAAGACTGTCTCGCTGGAGCTTGGGTTGCCACAGTCAT
CGGTCTGCCTCTTCTGGCCTTCGATTTTCACTGGGTGAATGGGGACCGCTCTTCTGCCAACCTGCTTCTG
GGAGGAGGCATGGTGCTGGCAGTGGCTGGTGATCACCTGGGCCCTGAAGGGTGCTCTGTCGCTGGGCAGG
CAGTACTGCTGGTGGTTGCAGTGACCATCCTTATTGTGGCTGTTTTCACAGCTAACACTTACGGGATGTG
GGGGGGTACCCTGCTGGGTGTGGCAGGCCTCTTGAGCAGGCTGGAAGAAGACAGGCTGCTACTGCTGCCA
AAGGAGGATGTCTGTCGTTGGGCCCTGGCTGCAGGTAGTTGGGCCTATTGCAGGGCCCTGCACACACAGC
GCCTGCAGTGGGAGTGATTGTAGCACTGATTGGGGCTTCTGTGCCAGGTACTACTATGCCTCCTACCTGC
CCACATGTAGAGCCTGTTATAATTTTACTAATGGGCAGAGCTTGGGTGCTATCCCTTCTCTAGTCATGCA
TGTGTGGAAGTTTACCTAAACCAGAATGCTAACAACAGGTCTTCAGGACACTTGGGGCCTGGGAGGAACA
TGGTTGTGAGTCAGAGACCTGATTTCCAATAAACGTAAGGAATATAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3670832 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3670832 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006572 same experiment
 EMAGE:31924 same embryo
 EMAGE:29620 same embryo
 EMAGE:31633 same embryo
 EMAGE:31600 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS