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EMAGE:30000

Zkscan3 zinc finger with KRAB and SCAN domains 3 ( MGI:1919989)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:30000 EMAGE:30000 EMAGE:30000 EMAGE:30000 EMAGE:30000
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6150
Entity Detected:Zkscan3, zinc finger with KRAB and SCAN domains 3 ( MGI:1919989)
Sequence:sense strand is shown

>T6150
CCCACGCGTCCGGCGGGGTGCTACGAGGTGCTGCGTTCGCGGTCTTTTACAGAAATACAACTCACAGCTA
CAGTGAAACGGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCTTGGACTCAC
ACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGTCCTCCCCCTTGGCAGA
GGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCA
GAGGCAGCCGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACA
TGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCT
GCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGGGAGGAGGTGGTGGCGCTGCTGGAGTACTTGGAC
AGGCAGCTGGATGACACACCTCCACAGGTTCCAGATGATGACGATGGGCAGGAACTCCTTTGCTCCAAGG
CAGTGCTGTTGACATCAGCTCAGGGCTCAGAAAGTAGCCAGATGGAGCCCGTGGAGCCTCTGCTGAAGCA
GGAGTCTTTGGGATCCCTGCCCTCAGAAGTCAGAGTCACTCATGTGGGGCACTGTGGAGAAGATGGAGTG
ACAGCTACTAGGCTCACATCGGAATTACAGGGGTTGCTGAAAATGGAAGATGTAGCCCCAGTCCTTTCCC
CCAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGGAATGCAGGAGCACTCTGGCAG
CCTGGTTTCCCTGGATCAGGACATGCAGACTAAGGTTAGGGACTTGCCTCGAGCTGAAGAATACAGGGAC
CAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCA
GTGAGCAGGAAGGCAAGTTACAGGCAGCACAGAAGAGTGCCACAGGAACCAGGCGGTTCTATTGCCGTGA
ATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCC
TATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGAAGCTCAGCTCTCATTATTCATCAGAGAGTTCACA
CTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAACA
CCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGC
AGCCTCCTTGAACATCACAGAATTCACACTGGGGAGAAGCCATACCAGTGCAACATGTGTCCCAAAGCCT
TTAGGCGTAGCTCACATCTTCTGAGACATCAGAGGACCCATACTGGGGATAAAGATTTTTTTGTTCCAGA
ACCTTACTGGGAAAGTCAGAGTAGGGTGGAAAGCCATTGGGAAAATATTGAAACTCCTGTGTCTTATCAA
TGTAATGATTGTGAGAGAAGTTTCAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTGGTG
AGAAGCCCTTTGAGTGCCAAACCTGTGGAAAAGGCTTCACCCGACCTTCATACCTTATTCAACATCAGAG
AAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAAGTTGGTGTTCAACTG
TCATTGAACTGAAGCCACTCTGTAGTTCTTAATGACTGCAGAAGTCATAGGCTGGGGCTCTATTTGATAA
TGTACATTCTCAGATATTAGGAATCTGGCTAAGACTTATCTTCTACATTCTAGAAGGTGACTAGGAAAAA
AAAATTAATTTCATAGAAGAGTTGTCTACAAGAGTCCTCACCCATTGGAACTAAATGGGCTTCCTGACTG
TCAAATTGCCTTCCCTTGTCCTGCACTTCATATCTCTTGAGGGAATGGTTATGCTTTGGGGGTGTTGCTC
TGATCCTTCATTAGGCTATTGGGCCCTTCACATGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTGTGC
CTTGTATACAGGTGCTAATAGACATTTATTAAATATACTGGTGAGATTTCCTACATAGCTCTAAAAACCC
ATTATCTGGAAATTCTCACCAAAACCATTTGTATATCTTTTTAAAAAAATGATGTTTTAGATTGAATCAA
TGTAGAACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAACTTGGCAGGGCAGAGGTGAAGGTGAGGTT
ACTGTGCTAAAATCCTTTAATCCTTTACCTAATTTAGGAATTCTGTGAGAGTGCCTTAAACAGCTTTCTT
AGCATTAAATCATTGTGAATGTGCCACCCATGGAATTCCACTAATATTTTTTTTCTTGTTAATTTTGTTA
CTCTTGAGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3496252 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3496252 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004075 same experiment
 EMAGE:29980 same embryo
 EMAGE:29991 same embryo
 EMAGE:29982 same embryo
 EMAGE:29995 same embryo
 EMAGE:29975 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS