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EMAGE:3051

Hmgb1 high mobility group box 1 ( MGI:96113)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:3051 EMAGE:3051
0495a.jpg This embryo was treated with ProteinaseK for 3min. 0495b.jpg This embryo was treated with ProteinaseK for 30min.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:3051Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3051_wholemount_strong_3D_1.wlz
3051_wholemount_moderate_3D_1.wlz
3051_wholemount_possible_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3051_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
central nervous system
possible possible
Authors stated that in some instances they could not determine expression levels with certainty.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3506228
Entity Detected:Hmgb1, high mobility group box 1 ( MGI:96113)
Sequence:sense strand is shown

>MGI:3506228
CATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAGAAGCACCCGGATGCTTCTGTCAACTTCTCAGA
GTTCTCCAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGGAAATTTGAAGATATG
GCAAAGGCTGACAAGGCTCGTTATGAAAGAGAAATGAAAACCTACATCCCCCCCAAAGGGGAGACCAAAA
AGAAGTTCAAGGACCCCAATGCACCCAAGAGGCCTCCTTCGGCTTTCTTCTTGTTCTGTTCTGAGTACCG
CCCCAAAATCAAAGGCGAGCATCCTGGCTTATCCATTGGTGATGTTGCAAAGAAACTAGGAGAGATGTGG
AACAACACTGCAGTGTATGACAAGCAGCCCTATGGGAAGAAGGCTGCCAAGCTGAAGGAGAAGTACGAGA
AGGATATTGCTGCCTACAGAGCTAAAGGAAAACTGATGCAGCGAAAAAGGGGGTGGTCAAGGCTGAAAAG
AGCAAGAAAAAGGAGGAAGAGGAAGATGATGATGAGGATGAAGAGGATGAGGAAGAGGAGGAAGAGGAAG
ATGAATAAGAAGATGATGATGATGATGAAAAGTTGGATCTAGTGCAGTTTATTTTTTTTTTCTTGTCTAT
AAAGCATTTAAACCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAATTGAAATGTAAGGCTGTGTAAG
ATTTGTTTTTAAACTGTACAGTGTCTTTTTTTTATTGTATAGTTAACACACTACCGAATGTGTCTTTAGA
TAGCCCTGTCCTGGTGGTATTTTCAATTGCCACTAACCTTG
nt 130 - nt 940 of XM_130791.1
Notes:The template DNA sequence was PCR amplified from E13.5 or P0 mouse brain, embryonic kidney or testis cDNA using: 5' primer: ccggaattcgtgcaaacttgccgggaggagc 3'primer: cccaagctttgtaccaggcaaggttagtggc
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Yu J., Tenzen T., Gray P.A., Fu H., Luo P., Zhao Q., Ferrari A., Yuk D.I., Tsung E.F., Cai Z., Alberta J.A., Cheng L.P., Liu Y., Stenman J.M., Valerius M.T., Billings N., Kim H.A., Greenberg M.E., Rowitch D.H., Stiles C.D., Ma Q., McMahon A.P. Indexed by GXD, Spatially mapped by EMAGE.
Principal investigator:Andrew P. McMahon, Molecular and Cellular Biology, Harvard, Department of Molecular and Cellular Biology Harvard University 16 Divinity Ave Room 1059, Cambridge, U.S.A MA 02138
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1126/science.1104935] [ PMID:15618518] Gray PA, 2004 Mouse brain organization revealed through direct genome-scale TF expression analysis. Science (306):2255-7
Acknowledgments:This work was supported by the Charles Dana Foundation, the National Institute of Neurological Disorders and Stroke (QM, CDS, DHR & APM), the National Institute of Dental and Craniofacial Research (QM), the National Institute of Diabetes and Digestive and Kidney Diseases (APM), a Ford Foundation Postdoctoral Fellowship for Minorities (PAG), a Parker B. Francis Fellowship in Pulmonary Medicine (PAG) and the Pew Trust (QM).
Links:MGI:3508930 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE