EMAGE mouse gene expression spatial database

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EMAGE:30895

Gipc2 ( MGI:1889209)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

hindgut

moderate

regional

moderate expression: see section 12 13 14 15 16

kidney calyx

moderate

regional

moderate expression: see section 17 weak expression: see section 05 06 07 14 15 16

rectum

moderate

regional

moderate expression: see section 11

midgut

moderate

regional

moderate expression: see section 11 12 13 14 15 16 17 18 19

midgut loop

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7510
Entity Detected:	Gipc2, ( MGI:1889209)
Sequence:	sense strand is shown >T7510 CCCACGCGTCCGGAGGCCAGGGAGCTTGCGCCGCAGCGCAGGTGGTCCACGCCCTGGGACCTGCAAGATG CCGCTTGGACTGCGCGGGAAGAAGAAGGCGGCCAAGTCCAAGGAGGCCGCGAGGCTGGTGGAGGGCGAGA GATCCAGTGGCAGCCAGGGTGTCCCCGGACCCCCAGCTCCGGCACGCAAGCTGGTGTTCCACGCACAGCT GGCGCACGGCAGCGCCACGGGCCGAGTGGAGGACTTCTCCAGCATCAGCGAGCTCTACGCCAAGATTGCC GGCGTGTTCGAGATCGCGCCATCCGAGATCTTATTTTGTACCTTAAATACGCCTAAAATTGACATGGGAA AGCTCCTGGGTGGGCAGCTGGGCCTTGAGGATTTCATATTTGCCCACGTGAAAGGCACAAAAAAGGAAGT GAATGTTTATAAATCAGAGGATTCGCTTGGACTCACCATCACGGATAACGGCGTGGGCTATGCTTTTATC AAGAGAATTAAAGATGGCAGCACCATTGACTCAGTTAAAACGATCTGTGTGGGGGATCATATCGAATGTA TAAACGGAGAAAATATTGTTGGGTGGCGTCACTTTGAAGTCGCTAAGAAGTTAAAGGAATTGAAAAAGGA GGAGCTCTTTACTTTGCAGTTAATAGAACCCAAGAAGGCTTTTGAAATAGGACCAAGGTCGAAAGCCGGA AAGACATCAACAGAAAAAATTGGTACTTCAAGAGGGACCCTCCGTCTGAGATCGAAAGGCCCCGCTACAG TAGAAGAGCTGCCCTCTGAAGCCAAGGCAAAGGCAATCGGAAAGGTTGATGATCTCCTTGAGCTGTACAT GGGGATTCGAGATATTGACTTAGCTACAACCATGTTTGAAGCTGGGAAAGACAAGAGCAACCCAGATGAG TTTGCTGTCGCTCTTGACGAGACTCTGGGAGACTTTGCCTTTCCTGATGAGTTCCTGTTCGACGTGTGGG GAGCCATCAGTGACATGAAACAAGGAAGATGATGGCGTGGCCCGTGTTCCTGCAGAGATGACCACAGTTC TGCAGGCAGCCTTCTCCGGGGTCTTAGACACTGTTATGAACTCTACTTTAGCCTCCTGTGTATGAGATAC AGTCTTCGAAATGTAATTTTGATTTATGGATGATGTTTAATATAGTTTCTTATGTAGTGTGTTTAAGGTA AATTAAAGTGTGATCCATTTTAATATTTGTTCAAAAGCTTTAAAATTTTTAGAGGAATCTTTCTACATAG GTGATTTTGGTCCCTGTTTGTACCCACGGCTCTTTCCACATAAAATACTTGATTACAAAAAAAAAAAAAA A
Notes:	The probe template was PCR amplified from IMAGE:4238716 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4238716 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_006475 same experiment
	EMAGE:31858 same embryo
	EMAGE:29252 same embryo
	EMAGE:29476 same embryo
	EMAGE:29322 same embryo
	EMAGE:29575 same embryo
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source