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EMAGE:31017

Nefl neurofilament, light polypeptide ( MGI:97313)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017
euxassay_002969_01 euxassay_002969_02 euxassay_002969_03 euxassay_002969_04 euxassay_002969_05
EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017
euxassay_002969_06 euxassay_002969_07 euxassay_002969_08 euxassay_002969_09 euxassay_002969_10
EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017
euxassay_002969_11 euxassay_002969_12 euxassay_002969_13 euxassay_002969_14 euxassay_002969_15
EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017 EMAGE:31017
euxassay_002969_16 euxassay_002969_17 euxassay_002969_18 euxassay_002969_19 euxassay_002969_20
EMAGE:31017 EMAGE:31017
euxassay_002969_21 euxassay_002969_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
knee mesenchyme
strong strong
regionalstrong expression: see section 01 02 03
vestibulocochlear viii ganglion
strong strong
regionalstrong expression: see section 06 07 08 17 18
cervico-thoracic ganglion
strong strong
regionalstrong expression: see section 10 11 16
rest of cerebellum mantle layer
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10 11 12 15 16 17 18 19 20 21
axial skeleton tail region
moderate moderate
regionalmoderate expression: see section 11 12 13 14
thoracic ganglion
strong strong
regionalstrong expression: see section 12 13 14 15
lower leg mesenchyme
strong strong
regionalstrong expression: see section 01 02 03 04 22
axial musculature
moderate moderate
regionalmoderate expression: see section 06 21 22
midgut loop
weak weak
regionalweak expression: see section 08 09 10 11 12 13 14 15 16 17 18 19
esophagus
moderate moderate
regionalmoderate expression: see section 13 14
facial vii ganglion
strong strong
regionalstrong expression: see section 04 05 19 20 21
cornea stroma
strong strong
regionalstrong expression: see section 22 not examined expression: see section 01 02 21
vagus x ganglion
strong strong
regionalstrong expression: see section 09 17
trigeminal v ganglion
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 17 18 19 20 21 22
telencephalon marginal layer
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 moderate expression: see section 01
midbrain marginal layer
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 15 16
telencephalon mantle layer
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 moderate expression: see section 01
midbrain mantle layer
strong strong
regionalstrong expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
neural retina
strong strong
regionalstrong expression: see section 01 02 03 21 22
spinal cord mantle layer
strong strong
homogeneousstrong expression: see section 11 12 13 14 15 16 17
extrinsic ocular muscle
strong strong
regionalstrong expression: see section 01 02 03 20 21 22
olfactory cortex marginal layer
strong strong
regionalstrong expression: see section 08 09 10 11 14 15 16
stomach
weak weak
regionalweak expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16
tongue
weak weak
regionalweak expression: see section 11 12 13
foot mesenchyme
strong strong
regionalstrong expression: see section 04
glossopharyngeal ix ganglion
strong strong
regionalstrong expression: see section 07 08 18
body-wall mesenchyme
moderate moderate
regionalmoderate expression: see section 06 07 08 09 18 19 20 21
pons mantle layer
strong strong
homogeneousstrong expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19
midgut
weak weak
regionalweak expression: see section 13 14 15
hypothalamus mantle layer
strong strong
homogeneousstrong expression: see section 07 08 09 10 11 12 13 14 15 16 17
dorsal root ganglion
strong strong
regionalstrong expression: see section 08 09 10 11 12 16 17 18
adenohypophysis
strong strong
regionalstrong expression: see section 13 14 15 moderate expression: see section 11 12
medulla oblongata basal plate mantle layer
strong strong
homogeneousstrong expression: see section 07 08 09 10 11 12 13 14 15 16 17 18
adrenal medulla
strong strong
regionalstrong expression: see section 16 moderate expression: see section 09 10 weak expression: see section 18
diencephalon lateral wall mantle layer
strong strong
homogeneousstrong expression: see section 07 08 09 10 11 12 13 14 15 16 17
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4307
Entity Detected:Nefl, neurofilament, light polypeptide ( MGI:97313)
Sequence:sense strand is shown

>T4307
CCTTTCCCTCTTCTCCCCCGTTCTTCTCTCTAGGTCCCCCATCTCCGCCCCGGGCCTGAGGGGCGCACCG
GCCGCCACCATGAGTTCGTTCGGCTACGATCCGTACTTTTCGACCTCCTACAAGCGGCGCTATGTGGAGA
CGCCCCGGGTGCACATCTCCAGCGTGCGCAGCGGCTACAGCACGGCGCGCTCCGCGTACTCCAGCTACTC
CGCGCCGGTCTCCTCCTCGCTGTCCGTGCGCCGCAGCTACTCGTCCAGCTCTGGCTCTTTGATGCCCAGC
CTGGAGAATCTCGATCTGAGCCAGGTAGCCGCCATCAGCAACGACCTCAAGTCTATCCGCACACAAGAGA
AGGCACAGCTGCAGGACCTCAACGATCGCTTCGCCAGCTTCATCGAGCGCGTGCACGAGCTGGAGCAGCA
GAACAAGGTCCTGGAAGCCGAGCTGTTGGTGCTGCGCCAGAAACACTCTGAGCCTTCCCGCTTCCGCGCC
CTGTACGAGCAGGAGATCCGCGATCTGCGGCTGGCAGCGGAAGACGCCACTAACGAGAAGCAGGCGCTGC
AGGGCGAGCGCGAGGGGCTGGAGGAGACTCTGCGCAACCTGCAGGCTCGCTATGAGGAAGAAGTGCTGAG
CCGCGAGGACGCCGAGGGCCGGCTGATGGAAGCGCGCAAAGGTGCGGATGAGGCCGCGCTCGCCCGCGCC
GAGCTGGAGAAGCGCATCGACAGCCTGATGGACGAGATAGCTTTCCTGAAGAAGGTGCACGAGGAAGAGA
TCGCCGAGCTGCAGGCTCAGATCCAGTATGCTCAGATCTCCGTGGAGATGGACGTGTCCTCCAAGCCCGA
CCTCTCCGCCGCTCTCAAGGACATCCGCGCTCAGTACGAGAAGCTGGCCGCCAAGAACATGCAGAACGCC
GAAGAGTGGTTCAAGAGCCGCTTCACCGTGCTAACCGAGAGCGCCGCCAAGAACACCGACGCTGTGCGCG
CTGCCAAGGACGAGGTGTCGGAAAGCCGCCGCCTGCTCAAGGCTAAGACCCTGGAGATCGAAGCCTGCCG
GGGTATGAACGAAGCTCTGGAGAAGCAGCTGCAGGAGCTAGAGGACAAGCAGAATGCAGACATTAGCGCC
ATGCAGGACACAATCAACAAACTGGAGAATGAGCTGAGAAGCACGAAGAGCGAGATGGCCAGGTACCTGA
AGGAGTACCAGGACCTCCTCAATGTCAAGATGGCCTTGGACATCGAGATTGCAGCTTACAGAAAACTCTT
GGAAGGCGAAGAGACCAGGCTCAGTTTCACCAGCGTGGGTAGCATAACCAGCGGCTACTCTCAGAGCTCG
CAGGTCTTCGGCCGTTCTGCTTACAGTGGCTTGCAGAGCAGCTCCTACTTGATGTCTGCTCGCTCTTTCC
CAGCCTACTATACCAGCCACGTCCAGGAAGAGCAGACAGAGGTCGAGGAGACCATTGAGGCTACGAAAGC
TGAGGAGGCCAAGGATGAGCCCCCCTCTGAAGGAGAAGCAGAAGAGGAGGAGAAGGAGAAAGAGGAGGGA
GAGGAAGAGGAAGGCGCTGAGGAGGAAGAAGCTGCCAAGGATGAGTCTGAAGACACAAAAGAAGAAGAAG
AAGGTGGTGAGGGTGAGGAGGAAGACACCAAAGAATCTGAAGAGGAAGAGAAGAAAGAGGAGAGTGCTGG
AGAGGAGCAGGTGGCTAAGAAGAAAGATTGAGCCCTATTCCCAACTATTCCAGGAAAAGTTCTCCCCAAT
CAGGTCAACCTCATCACCAACCAACCAGTTGAGTTCCAGATCCTATACAAATTAAGAAGTCAATACATGT
ATAATTCTGAGATGACTTAGGTTGGACTTTCAATGTTGTGCTATGAATTTCCTCCTTACGCAGAGTATCT
GTTTGCTTGCAGAGTGGCTTTCTGGCTTGCTGCCAGCCTGTGCATGGTCCATGCTTATGAGTTCAGGATC
TATGGCAATGTGAATCACACAGATGTTTACAATAATAATAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4506903 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4506903 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002969 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS