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EMAGE:31078

Lrp6 low density lipoprotein receptor-related protein 6 ( MGI:1298218)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31078 EMAGE:31078 EMAGE:31078 EMAGE:31078 EMAGE:31078
euxassay_011660_01 euxassay_011660_02 euxassay_011660_03 euxassay_011660_04 euxassay_011660_05
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euxassay_011660_11 euxassay_011660_12 euxassay_011660_13 euxassay_011660_14 euxassay_011660_15
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euxassay_011660_16 euxassay_011660_17 euxassay_011660_18 euxassay_011660_19 euxassay_011660_20
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euxassay_011660_21 euxassay_011660_22 euxassay_011660_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 06 07 08 09 16 17 18 19 20
trachea
weak weak
regionalweak expression: see section 13 14
vibrissa
weak weak
regionalweak expression: see section 03 04 05 19 20
nasal septum
weak weak
regionalweak expression: see section 09 10 11 12 13 14
lung
weak weak
regionalweak expression: see section 04 05 06 07 08 09 10 11 12 14 15 16 17 18 19 20 21 22 23
otic capsule
weak weak
regionalweak expression: see section 07 08 09 10 16 17 18 19
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31974
Entity Detected:Lrp6, low density lipoprotein receptor-related protein 6 ( MGI:1298218)
Sequence:sense strand is shown

>T31974
GGCTATCCGTCGCTCCTTCATAGATGGATCTGGCAGTCAGTTTGTGGTCACGGCCCAGATTGCTCATCCT
GATGGTATTGCTGTTGACTGGGTTGCAAGGAACCTGTACTGGACAGACACTGGCACGGATCGTATAGAAG
TGACAAGGCTCAATGGGACCATGAGGAAGATCTTGATTTCAGAGGACTTAGAGGAGCCCCGGGCTATCGT
GTTAGATCCCATGGTTGGGTACATGTATTGGACAGACTGGGGAGAAATCCCAAAAATAGAGCGAGCTGCT
CTGGACGGATCTGACCGAGTAGTTCTTGTCAACACTTCCCTTGGTTGGCCAAACGGCTTAGCCCTGGATT
ATGATGAAGGCACAATATACTGGGGAGATGCCAAAACAGACAAAATTGAGGTTATGAATACCGATGGCAC
CGGGAGGCGAGTGCTGGTGGAAGACAAGATCCCTCACATATTTGGGTTTACCTTGCTGGGTGACTATGTT
TACTGGACTGACTGGCAGAGGCGGAGCATCGAGAGAGTACACAAACGGAGCGCAGAGAGGGAGGTCATCA
TAGATCAGCTGCCAGACCTCATGGGACTGAAGGCCACAAGTGTTCACAGAATCATTGGTTCTAACCCCTG
TGCTGAGGACAATGGAGGATGTAGCCATCTTTGCCTGTACAGGCCTCAGGGGCTTCGATGCGCCTGTCCC
ATTGGCTTTGAGCTCATCAGTGACATGAAGACATGCATTGTCCCCGAGGCTTTCCTTCTGTTCTCGAGGA
GAGCGGATATCAGACGCATATCTTTGGAAACAAACAACAACAATGTGGCCATTCCTCTCACTGGTGTCAA
AGAAGCCTCTGCTTTGGATTTTGATGTCACAGACAACAGGATTTACTGGACTGATATATCACTGAAGACT
ATTAGCAGAGCCTTTATGAATGGCAGTGCACTGGAACATGTGGTAGAGTTTGGCTTAGATTATCCAGAAG
GCATGGCAGTGGA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6409058), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 59763. Forward Primer - name:059763_F_IRAV115_a05_Lrp6, sequence:GGCTATCCGTCGCTCCTT; Reverse Primer - name:059763_R_SP6_IRAV115_a05_Lrp6, sequence:GTCCACTGCCATGCCTT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_011660 same experiment
 EMAGE:29391 same embryo
 EMAGE:31082 same embryo
 EMAGE:29335 same embryo
 EMAGE:29389 same embryo
 EMAGE:29338 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS