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EMAGE:31117

Nfs1 nitrogen fixation gene 1 (S. cerevisiae) ( MGI:1316706)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31117 EMAGE:31117 EMAGE:31117 EMAGE:31117 EMAGE:31117
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
thymus primordium
strong strong
homogeneousstrong expression: see section 13 17 moderate expression: see section 14 15 16
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 15 16 17 18 19
liver lobe
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T3941
Entity Detected:Nfs1, nitrogen fixation gene 1 (S. cerevisiae) ( MGI:1316706)
Sequence:sense strand is shown

>T3941
GCTGAGGACTTGCAAGCGCCGCGGATGGTGGGCTCTGTGGCTGGGAACATGCTGCTGCGAGCCGCTTGGA
GGCGGGCGTCGTTGGCGGCTACCTCCTTGGCCCTGGGAAGGTCCTCGGTGCCCACCCGGGGACTGCGCCT
GCGCGTTGTAGATCATGGCCCCCATTCGCCTGTTCACTCAGAGGCAGAGGCAGTGCTGCGACCTCTCTAC
ATGGACGTACAGGCCACCACTCCTCTGGATCCCAGAGTGCTTGATGCCATGCTCCCATACCTTGTCAACT
ACTATGGGAACCCTCATTCTCGGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCG
CCAGCAAGTAGCATCTCTGATTGGAGCTGATCCTCGGGAGATCATTTTCACTAGTGGAGCTACTGAGTCC
AACAACATAGCAATTAAGGGAGTGGCCAGGTTCTACAGGTCAAGGAAAAAACACTTGGTCACCACCCAGA
CAGAACACAAATGTGTGCTGGATTCCTGCCGCTCCCTGGAAGCTGAGGGCTTTCGGGTCACTTACCTCCC
TGTGCAGAAGAGCGGGATCATTGACTTAAAGGAACTAGAGGCTGCCATCCAGCCAGACACCAGCCTGGTC
TCCGTTATGACTGTGAACAATGAAATTGGAGTAAAGCAACCGATTGCAGAAATAGGGCAGATTTGTAGTT
CCAGAAAGGTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACAT
GAAGATTGATCTCATGAGCATCAGCGGTCACAAACTCTATGGCCCTAAAGGGGTTGGTGCTATCTATATC
CGCCGTAGGCCCCGGGTACGTGTGGAGGCCCTACAGAGTGGAGGCGGGCAGGAGCGGGGTATGCGGTCTG
GGACAGTGCCCACACCCTTGGTGGTGGGCCTGGGAGCTGCATGTGAGTTGGCACAACAAGAGATGGAATA
CGACCATAAGCGGATCTCAAAGTTAGCAGAGCGACTGGTACAGAAGATAATGAAGAACCTTCCAGATGTG
GTAATGAACGGGGACCCGAAGCAGCACTACCCTGGCTGTATCAACCTCTCCTTCGCGTATGTGGAAGGAG
AGAGCCTGCTGATGGCCCTCAAGGATGTGGCCTTGTCCTCAGGGAGTGCCTGCACTTCTGCGTCATTGGA
GCCCTCTTACGTCCTCAGAGCAATTGGTACCGATGAGGATTTAGCACACTCCTCTATCAGGTTTGGCATC
GGCCGCTTCACTACAGAAGAGGAGGTGGACTACACGGCGGAGAAGTGCATCCACCACGTGAAGCGCCTTC
GAGAAATGAGTCCTCTCTGGGAGATGGTCCAGGATGGCATTGACCTCAAGAGCATCAAGTGGACCCAGCA
TTAGAGGAGTGGGCTGTGACTTTGTGCTGGCCTGGCTGTTCTGGCCTCACTGATCTGTGCACAGCCAGGA
ACCTCACTGCCTGACGTGGTCCATGCTCAAAGCAGATGGCAAGCTCTGCAGTGACTTCACCACAGAATGT
TCTCTAGTGAAAGCTGAGGCTAGCTTTCCTAGCCTCGGCTCCTGTGTAGGCATGTATTCCGTAATCTTCC
TCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGGCACTGCCTTGTTACTGC
CACAGGAGGACCTACCTGTGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCT
GTGAATCATTACTCTAGCTGCTCAGCTGAACTGGCGCCATTAGGGACTGGCATAAACAAACTTTATTTTA
ACCTTTTTTGTGGCTTTGAAAGACATCTCTTTGTATCGACTTCAGCTGAAGAACACCAAGTTGTATTAAA
GTCTTGTTTCCTTTGGGTTCTCATCTTCTTTCCTCTCTTTTGACTTAATGTAAGTAGAAATATCCATGAC
CCCAATCATTATTCTAATAATTTACTTAATTCATTAAACTTAATTCAATAAATTCCCAAAAAAAAAAAAA
AA
Notes:The probe template was PCR amplified from IMAGE:3711352 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3711352 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002929 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS