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EMAGE:31126

Acsl4 acyl-CoA synthetase long-chain family member 4 ( MGI:1354713)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126
euxassay_006286_01 euxassay_006286_02 euxassay_006286_03 euxassay_006286_04 euxassay_006286_05
EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126
euxassay_006286_06 euxassay_006286_07 euxassay_006286_08 euxassay_006286_09 euxassay_006286_10
EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126
euxassay_006286_11 euxassay_006286_12 euxassay_006286_13 euxassay_006286_14 euxassay_006286_15
EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126
euxassay_006286_16 euxassay_006286_17 euxassay_006286_18 euxassay_006286_19 euxassay_006286_20
EMAGE:31126 EMAGE:31126 EMAGE:31126 EMAGE:31126
euxassay_006286_21 euxassay_006286_22 euxassay_006286_23 euxassay_006286_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
vestibulocochlear viii ganglion
strong strong
regionalstrong expression: see section 06 07 16 17 18
cervico-thoracic ganglion
moderate moderate
regionalmoderate expression: see section 09 15
spinal cord
moderate moderate
homogeneousmoderate expression: see section 08 09 10 11 12 13 14 15
trigeminal v nerve
strong strong
regionalstrong expression: see section 09 16
thoracic ganglion
moderate moderate
regionalmoderate expression: see section 11 weak expression: see section 10
telencephalon
moderate moderate
homogeneousmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
upper arm mesenchyme
moderate moderate
regionalmoderate expression: see section 01 02 22 23 24
facial vii ganglion
strong strong
regionalstrong expression: see section 04 05 19 20
midbrain
moderate moderate
homogeneousmoderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18
vagus x ganglion
strong strong
regionalstrong expression: see section 07 08 17
upper leg mesenchyme
moderate moderate
regionalmoderate expression: see section 01 02 03 20 21 23 24
vertebral axis musculature
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
thymus primordium
moderate moderate
homogeneousmoderate expression: see section 10 11 12 13 14
diencephalon
moderate moderate
homogeneousmoderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17
trigeminal v ganglion
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 16 17 18 19 20 21
vibrissa
moderate moderate
regionalmoderate expression: see section 03 04 weak expression: see section 06 07 08 18 19 20 21
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 08 09 10 11 13 14 15 16 17
cervical ganglion
moderate moderate
regionalmoderate expression: see section 08 16
hindbrain
moderate moderate
homogeneousmoderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
retina nuclear layer
strong strong
homogeneousstrong expression: see section 01 moderate expression: see section 02 03 22 23 24
foot mesenchyme
moderate moderate
regionalmoderate expression: see section 05 weak expression: see section 06 18 19 20
glossopharyngeal ix ganglion
strong strong
regionalstrong expression: see section 06 17 18
tongue muscle
moderate moderate
regionalmoderate expression: see section 11 12 13 weak expression: see section 10 14 15
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 12 13 14 15 16 17 weak expression: see section 06 07 08 09
vomeronasal organ
moderate moderate
regionalmoderate expression: see section 11 14
hand mesenchyme
moderate moderate
regionalmoderate expression: see section 02 03 04 weak expression: see section 19 20 21
tail mesenchyme
moderate moderate
regionalmoderate expression: see section 10 11 12 13 14 15
forearm mesenchyme
moderate moderate
regionalmoderate expression: see section 02 22
adrenal gland
strong strong
homogeneousstrong expression: see section 06 07 08 14 15 16
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8818
Entity Detected:Acsl4, acyl-CoA synthetase long-chain family member 4 ( MGI:1354713)
Sequence:sense strand is shown

>T8818
CTCGTAGCGAGCGAGGCAGCACCTTCGACTCAGATCACAGGAGATACACCTGTTCTTAAAAGTGAAAGAA
GAAATCTGTGTACTTTATTGCTGGCTTCCAAAGATTACTAACTTTTATCTGTATCACTAAAATTGAATTC
CCTTGGCTATACTGCTACTCTTACTGCTGCTTCCATTATTGCCTTCTCCAAAAACCTAAGGCTTTAAGAA
GCCAAAGAATAACAGCAAATAAACGCCATATTAGAAGCCTTCCACTATGAACCTTAAGCTAAATGTGCTC
ACCATTATATTGCTGCCTGTCCACTTGTTAATAACAATATACAGTGCCCTTATATTTATTCCATGGTATT
TTCTTACCAATGCCAAGAAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACC
TGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACT
CTGGATAAATTATTTGACCATGCTGTAGCCAAATTTGGGAAGAAGGACAGCCTTGGAACCCGGGAGATCC
TGAGTGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAGTTAATTCTTGGGAATTATAAATG
GATAAACTATCTTGAAGTGAACTGCAGAGTGAATAACTTTGGAAGTGGCCTCACTGCATTGGGACTGAAA
CCAAAGAACACCATTGCCATTTTCTGTGAGACCAGGGCAGAGTGGATGATTGCAGCACAGACTTGCTTTA
AGTACAACTTTCCACTTGTGACTTTATATGCCACACTTGGCAGAGAAGCTGTAGTTCATGGATTAAATGA
ATCTGAGGCTTCCTATCTGATTACTAGTGTTGAGCTTCTGGAAAGCAAACTGAAGGCGGCCTTAGTAGAT
ATCAATTGTGTTAAACATATCATTTATGTGGATAATAAGACTATCAATAGAGCAGAGTACCCTGAGGGGC
TTGAAATTCACAGCATGCAATCAGTAGAGGAGCTGGGAGCCAAGCCAGAAAACTTGAGCGTTCCTCCAAG
TAGACCAACCCCTTCAGACATGGCCATTGTCATGTACACCAGTGGTTCTACGGGCCGCCCCAAGGGAGTG
ATGATGCATCATAGCAATTTGATTGCTGGAATGACAGGCCAGTGTGAACGTATCCCTGGACTAGGACCGA
AGGACACATATATTGGCTACTTACCTTTGGCTCATGTGCTGGAACTGACAGCAGAGATATCATGCTTTAC
CTATGGCTGTAGGATTGGATACTCTTCACCCCTTACACTGTCTGACCAGTCCAGCAAAATCAAGAAGGGA
AGCAAGGGTGATTGTACTGTACTGAAACCCACACTTATGGCCGCTGTTCCGGAAATCATGGATAGAATTT
ATAAGAATGTTATGAGCAAGGTTCAAGAGATGAATTATGTTCAGAAAACTCTATTTAAAATCGGGTATGA
TTACAAATTAGAGCAAATCAAGAAAGGCTATGACGCCCCTCTTTGTAATCTGATACTGTTTAAAAAGGTG
AAGGCTCTGCTGGGAGGGAATGTCCGCATGATGCTGTCTGGCGGCGCGCCACTGTCCCCTCAGACACACC
GATTCATGAATGTCTGCTTCTGCTGCCCCATTGGTCAGGGATATGGGCTGACAGAATCATGTGGTGCTGG
AACAGTTACTGAAGTTACTGACTACACTACTGGAAGAGTTGGAGCTCCTCTTATTTGCTGTGAAATTAAA
CTGAAAGACTGGCAGGAAGGTGGTTATACAGTTCATGATAAGCCGAACCCCAGAGGTGAGATTGTGATCG
GTGGCCAGAATATCTCCATGGGATATTTTAAAAACGAAGAGAAAACAGCAGAAGATTATTGTGTTGATGA
AAATGGACAAAGGTGGTTTTGCACTGGCGATATTGGAGAATTCCATCCTGATGGATGCTTACAGATTATA
GATCGTAAGAAAGATCTGGTAAAGTTACAAGCAGGAGAATATGTATCTCTTGGGAAAGTAGAAGCTGCAC
TGAAGAATTGTCCACTGATCGACAACATCTGTGCTTTTGCCAAAAGTGACCAGTCCTATGTGATCAGTTT
TGTGGTTCCTAACCAGAAAAAGTTGACTCTTTTGGCACAACAGAAGGGGGTAGAAGGATCTTGGGTTGAT
ATTTGCAATAATCCCGCCATGGAAGCTGAAATACTGAAAGAAATTCGAGAAGCTGCAAATGCCATGAAAT
TGGAGCGATTTGAAATTCCGATCAAGGTTCGGTTAAGCCCAGAGCCATGGACCCCCGAGACTGGTTTGGT
AACAGATGCCTTCAAGCTGAAAAGGAAGGAGTTGAAGAACCATTATCTCAAAGACATTGAGCGAATGTAT
GGGGGCAAATAAAATGCGGCTCTCTGATTTCCATTTGCACAGGAGGTGGCCGATGGTTTTTAGTTCTAGA
GTTTAAGCCTTTGTTGATCTCCTTGTTAGAATATAAGGTGTATCTTCTAAAGACATGAAATAAAAACAAC
CAAAAGTCGTTAAAATAGTTGAGTCTACTTTAACTTGCATAGTCCTAGTGAAGCTGAGATTGCAAAGACA
TTTCCCTTTAGCTGTGTTAAGTTTAGAGCAGAAATTCTGTTTTTTAAAAGTAGCCTTATATACCCTTGTT
TTTATGAAGAGAAGATACTCCATGCTAAAGTAAAGAAATTGGACTTGGAATAGATAGAATTGAAGAAATT
TACAGCTTCCAGCGTCTATGTCTTCCTAGTTCAGAAGTTTCTATAATAATGATGACAAAATTATGTATTA
ACACTACTCAAAGCAGAAGCGCCACCAGGCTTTGAAATCCTCTTCCAACCATTTATCTTGAAGGGAAAAA
AGATCAGTCATAATGTATGGTATCAGTATCTTAGAAGGTATTATCTTAAGATCATAATTGTCATATAGGT
CAGACATAGAGTCATTGCAATATTGTGAATAATTACAGTGCCTGAAGTTAAGACTAAAACAACACACACC
TACCAAAAATATCTCATAATGTAATGAAGGGAAGCTGAGAACTAAAGCCAGCATCTGTAATTATTTAAAT
GTCTTAAAAGGAATGTTCACTTTTTAAAAGTGACCTTTCTGTGTGTAATGTGGTTAAAGACTGAGTGAGA
CCAATGGGAATGTGTTAGAAAGTCAATCAGAATTCAACAAGATTCATTGCCTTTCTGTTAGAACGCTGGT
GGAATCCTACGTATTCAAAATTAGGATCCTTGTGTAGCACTGAACCTGGGAAAGAGATTTAGACTTGGAA
TTTAAATTTGATAACAGGGCTTGGTTTTCAAATGTGCTTGTATTAAATTACATTTGTAATTTATGGTCTG
CTTGCTGTTGCTGATTGATTGTTGATCAGTAGTGTGCATTTCAGAGAGCCTTTCATTTTGCTTTAATTTC
AGCAAAGCGGGTTATGATACATGACTTCCTCAAAATCTTGTTCAAACCTACGGGTGATTAAATGTCTTGG
ATGAGCCTGGGGAAGTTAAAGGGAAGAAAACACTGTTACCACTTTTCCTGTTTGTGAAGAGTTTTAGAAA
CTGGAAATGCTAGATTTGGGAGAAGGGCAGAGTTACTTGATTAAGGACTGTCTGTGAAGTAACTTGGAGT
GTGAGTTTCTTTTTGAATCTTTAGCTAAAGTCTGGAATTATATATTCTTGATAGATATTCGCACTTGGAC
CATAGTTACTGTAAAAAGCAAAAATTCTTAATACTGTTATTCTTTGCACTTTTTCATAATCATTTTATAC
ACACACACACACATACACATGTGTATGTGTGTATATAATATATATATATATATGTTGCTTCCATTGCGTT
GTACAGATGTGGGCCACCACTACAACAAAATGAGTTCTTTGTGCTCTAAAATATTTATAAAGAAATTATT
TAAATGTTATGTATATGGTGGTAATAACGAAAAAAAATCATCTGGTGTTATAAGCAACAGCGAAGGTTTT
TGTAAAAGTTTCTTTTCAGTGTTCTGCAAAATAAAATTTGAGGCAAGTTTTCCCTGAAGTTATATGTGAG
TATTCTCATGCTACCATCTTGCCTTTGAAGCGTGAAAAGACATTAATTATCAAGTAGACTACTATTCAGC
TTCTACTTCCTCCTAGTGCACTGTTTATCCTTCAAGGGTGTTTTTTTTTTTTTTTTTTTAAGGCTTTTCC
AATATATGTATCCCATTTGGAATGGTGATCTTAAAATGTGAGTGCATGCATACTATCTTATTTAAGATAC
TTGCACCCCACCCACTCCCATCTCCCGAAGCTGGAACACTGCCAACTAGGTCCTTAAGAATCACGCAATT
AACACAAGGTTGGGTGCTGCTAATTCTTCATGAAAATCCAAACACGTTAAGGGACCAGGGAGATGCCACT
GCCCCCCTGAATTTTCATCAAAAATAGACACGTTTATGTAAACAGAACTATTTTCCATATTCATAGTGAC
TTTTTAAGTATTTGAGCCTAAAGATTTTGATCTCCATTTTTATAACTATTTAAATTGTTCACAATTATTA
CATGTTAGCCATCAAATAAAGCTGTGCTTACTATTGATTATAAGTGTGTGCATTTCTAAGTTGAACACTC
ATGATTTTTGCTTTAATTACACGAAAGGGTTTTATTTCTTTGATATTTGTACTCATTTTTTTTTAAGTAG
ACTGAAGGTATGATTGTCTGATTTTTTAGAAATGAAATACAGATGAAAGATTCATAGAGTCCAAAGCGAG
GGAGAATCCTGTTTCTTTATTCATAGAGACTGACTATATCTTTGGCTATATTTTCCTGGTAGCATATGAC
AAATGTTTCTACAGTGAGAAGCTGAGAACAGGTTAAAAGATTGTGTGGCGTTTGGGAACTGGAGAGATAC
ATTTTAATTTTGAATGTAGTTATACATTTTATATTCATATTTGTATTTTCTGTTAAAATGCACGATTGTA
GGATTGTTCCTTAGATTTTTGTGTTGACTCTTGAAAAGCTTTCTTTGTTCTTATTTTTAAGTTTGCACTT
GAATCTTATAAAAATAAATCCACCCATGTTATCAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6409748 using vector (pYX-Asc) specific primers. Forward Primer - name:RZ. T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6409748 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006286 same experiment
 EMAGE:30034 same embryo
 EMAGE:30007 same embryo
 EMAGE:30026 same embryo
 EMAGE:31148 same embryo
 EMAGE:31599 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS