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EMAGE:31160

Pdgfc platelet-derived growth factor, C polypeptide ( MGI:1859631)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160
euxassay_003799_01 euxassay_003799_02 euxassay_003799_03 euxassay_003799_04 euxassay_003799_05
EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160
euxassay_003799_06 euxassay_003799_07 euxassay_003799_08 euxassay_003799_09 euxassay_003799_10
EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160
euxassay_003799_11 euxassay_003799_12 euxassay_003799_13 euxassay_003799_14 euxassay_003799_15
EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160 EMAGE:31160
euxassay_003799_16 euxassay_003799_17 euxassay_003799_18 euxassay_003799_19 euxassay_003799_20
EMAGE:31160 EMAGE:31160 EMAGE:31160
euxassay_003799_21 euxassay_003799_22 euxassay_003799_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
hip mesenchyme
strong strong
regionalstrong expression: see section 02
knee mesenchyme
strong strong
regionalstrong expression: see section 01 02
rectum
moderate moderate
regionalmoderate expression: see section 13 14
rest of cerebellum marginal layer
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
cochlear duct
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 16 17 18
left lung
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10 11 12 13
lower leg mesenchyme
strong strong
regionalstrong expression: see section 01 02 03 04 05 21 22 23
rest of cerebellum ventricular layer
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
cochlea
strong strong
regionalstrong expression: see section 18
midgut loop
moderate moderate
regionalmoderate expression: see section 12 13 14
bladder
strong strong
regionalstrong expression: see section 12 13 14
esophagus
moderate moderate
regionalmoderate expression: see section 11 12 13
upper arm mesenchyme
strong strong
regionalstrong expression: see section 01 02
pharyngo-tympanic tube
strong strong
regionalstrong expression: see section 02 03 22 23
upper leg mesenchyme
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 20 21 22 23
vertebral axis musculature
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
nasal cavity respiratory epithelium
moderate moderate
regionalmoderate expression: see section 12 13 14 15 16
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 15 16 17 18 19
hindgut
moderate moderate
regionalmoderate expression: see section 12 13 14 15 16 17 18
naris
moderate moderate
regionalmoderate expression: see section 13
lateral ventricle choroid plexus
strong strong
regionalstrong expression: see section 06 07 08 09 13 moderate expression: see section 10 11 12 14 15 16 17 18 19
tongue epithelium
weak weak
regionalweak expression: see section 10
right lung
strong strong
regionalstrong expression: see section 14 15 16 17 18 19 20 21 22
head mesenchyme
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
stomach
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 09 10 11
tongue
weak weak
regionalweak expression: see section 16
shoulder mesenchyme
strong strong
regionalstrong expression: see section 01 02
urethra of male
strong strong
regionalstrong expression: see section 13 14
foot mesenchyme
strong strong
regionalstrong expression: see section 03 04 05 06 20 22 23
tongue muscle
weak weak
regionalweak expression: see section 11 12 13 14 15 16
midgut
moderate moderate
regionalmoderate expression: see section 12 13 14 15 16 17 18
elbow mesenchyme
strong strong
regionalstrong expression: see section 01 02
submandibular gland primordium
strong strong
regionalstrong expression: see section 06 07 08 09 10 16 17 18 19
hand mesenchyme
strong strong
regionalstrong expression: see section 03 04 05 06 21 23
renal cortex
moderate moderate
regionalmoderate expression: see section 07 08 09 10 16 17 18 19
not examined not examined
regionalnot examined expression: see section 01
tail mesenchyme
strong strong
regionalstrong expression: see section 11 12 13 14 15 16 17
forearm mesenchyme
strong strong
regionalstrong expression: see section 01 02
glans of male genital tubercle
moderate moderate
regionalmoderate expression: see section 12 13 14 15 16
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7042
Entity Detected:Pdgfc, platelet-derived growth factor, C polypeptide ( MGI:1859631)
Sequence:sense strand is shown

>T7042
CCACGCGTCCGCAAAAACTGGAGACACAGAAGAGGGCTCTAGGAAAAACTTTTGGATGGGATTATGTGGA
AACTACCCTGCGATTCTCTGCTGCCAGAGCCGGCCAGGCGCTTCCACCGCAGCGCAGCCTTTCCCCGGCT
GGGCTGAGCCTTGGAGTCGTCGCTTCCCCAGTGCCCGCCGCGAGTGAGCCCTCGCCCCAGTCAGCCAAAT
GCTCCTCCTCGGCCTCCTCCTGCTGACATCTGCCCTGGCCGGCCAAAGAACGGGGACTCGGGCTGAGTCC
AACCTGAGCAGCAAGTTGCAGCTCTCCAGCGACAAGGAGCAGAACGGAGTGCAAGATCCCCGGCATGAGA
GAGTTGTCACTATATCTGGTAATGGGAGCATCCACAGCCCGAAGTTTCCTCATACATACCCAAGAAATAT
GGTGCTGGTGTGGAGATTAGTTGCAGTAGATGAAAATGTGCGGATCCAGCTGACATTTGATGAGAGATTT
GGGCTGGAAGATCCAGAAGACGATCTATGCAAGTATGATTTTGTAGAAGTTGAGGAGCCCAGTGATGGAA
GTGTTTTAGGACGCTGGTGTGGTTCTGGGACTGTGCCAGGAAAGCAGACGTCTAAAGGAAATCATATCAG
GATAAGATTTGTATCTGATGAGTATTTTCCATCTGAACCCGGATTCTGCATCCACTACAGTATTATCATG
CCACAAGTCACAGAAACCACGAGTCCTTCGGTGTTGCCCCCTTCATCTTTGTCATTGGACCTGCTCAACA
ACGCTGTGACTGCCTTCAGTACCTTGGAAGAGCTGATTCGGTACCTAGAGCCAGATCGATGGCAGGTGGA
CTTGGACAGCCTCTACAAGCCAACATGGCAGCTTTTGGGCAAGGCTTTCCTGTATGGGAAAAAAAGCAAA
GTGGTGAATCTGAATCTCCTAAAGGAAGAGGTAAAACTCTACAGCTGCACACCCCGGAACTTCTCAGTGT
CCATACGGGAAGAGCTAAAGAGGACAGATACCATATTCTGGCCAGGTTGTCTCCTGGTCAAGCGCTGTGG
AGGAAATTGTGCCTGTTGTCTCCATAATTGCAATGAATGTCAGTGTGTCCCACGTAAAGTTACAAAAAAG
TACCATGAGGTCCTTCAGTTGAGACCAAAAACTGGAGTCAAGGGATTGCATAAGTCACTCACTGATGTGG
CTCTGGAACACCACGAGGAATGTGACTGTGTGTGTAGAGGAAACGCAGGAGGGTAACTGCAGCCTTCGTA
GCAGCACACGTGAGCACTGGCATTCTGTGTACCCCCACAAGCAACCTTCATCCCCACCAGCGTTGGCCGC
AGGGCTCTCAGCTGCTGATGCTGGCTATGGTAAAGATCTTACTCGTCTCCAACCAAATTCTCAGTTGTTT
GCTTCAATAGCCTTCCCCTGCAGGACTTCAGGTGTCTTCTAAAAGACCAGAGGCACCAAGAGGAGTCAAT
CACAAAGCACTGCCTTCTAGAGGAAGCCCAGACAATGGTCTTCTGACCACAGAAACAAATGAAATGAATG
TAGATCGCTAGCAAACTCTGGAGTGACAGCATTTCTTTTCCACTGACAGAATGGTGTAGCTTAGTTGTCT
TGATATGGGCAAGTGATGTCAGCACAAGAAAATGGTGAAAAACACACACTTGATTGTGAACAATGCAGAA
ATACTTGGATTTCTCCAACCTGTTTGCATAGATAGACAGATGCTCTGTTTTCTACAAACTCAAAGCTTTT
AGAGAGCAGCTATGTTAATAGGAATTAAATGTGCCATGCTGAAAGGAAAGACTGAAGTTTTCAATGCTTG
GCAACTTCTCCGCAATTTGGAGGAAAGGTGCGGTCATGGTTTGGAGAAAGCACACCTGCACAGAGGAGTG
GCCTTCCCTTCCCTTCCCTCTGAGGTGGTTTCTGTGTTTCATTGTGTATATTTTTATATTCTCCTTTTGA
CATTATAACTGTTGGCTTTTCTAATCTTGTTAAATATTTCTATTTTTACCAAAGGTATTTAATATTCTTT
TTTATGACAACCTAGAGCAATTATTTTTAGCTTGATAATTTTTTTTCTAAACAGAATTGTTATAGCCAGA
AGAACAAAGATGATTGATATAAAAATCTTGTTGCTCTGACAAAAACATATGTATTTCTTCCTTGTATGGT
GCTAGAGCTTAGCGTCATCTGCATTTGAAAAAATGGAATGGGGAAGTTTTTAGAATTGGTAGGTCGCAGG
GACAGTTTGATAACAACTGTACTATCATCAATTCCCAATTCTGTTCTTAGAGCTACGAACAGAACAGAGC
TTGAGTAAATATGGAGCCATTGCTAACCTACCCCTTTCTATGGGAAATAGGAGTATAGCTCAGAGAAGCA
CGTCCCCAGAAACCTCGACCATTTCTAGGCACAGTGTTCTGGGCTATGCTGCGCTGTATGGACATATCCT
ATTTATTTCAATACTAGGGTTTTATTACCTTTAAACTCTGCTCCATACACTTGTATTAATACATGGATAT
TTTTATGTACAGAAGTATATCATTTAAGGAGTTCACTTATTATACTCTTTGGCAATTGCAAAGAAAATCA
ACATAATACATTGCTTGTAAATGCTTAATCTGTGCCCAAGTTTTGTGGTGACTATTTGAATTAAAATGTA
TTGAATCATCAAATAAAATAATCTGGCTATTTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
Notes:The probe template was PCR amplified from IMAGE:4008749 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4008749 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003799 same experiment
 EMAGE:30782 same embryo
 EMAGE:29369 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS