EMAGE mouse gene expression spatial database

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EMAGE:31263

Sidt2 SID1 transmembrane family, member 2 ( MGI:2446134)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_002887_01	euxassay_002887_02	euxassay_002887_03	euxassay_002887_04	euxassay_002887_05

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euxassay_002887_11	euxassay_002887_12	euxassay_002887_13	euxassay_002887_14	euxassay_002887_15

euxassay_002887_16	euxassay_002887_17	euxassay_002887_18	euxassay_002887_19	euxassay_002887_20

euxassay_002887_21	euxassay_002887_22	euxassay_002887_23

View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

submandibular gland primordium

moderate

regional

moderate expression: see section 08 09 10 18 19 20 weak expression: see section 11 17

vibrissa

moderate

regional

moderate expression: see section 06 07 08 20 21 22

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1088
Entity Detected:	Sidt2, SID1 transmembrane family, member 2 ( MGI:2446134)
Sequence:	sense strand is shown >T1088 GTTGGCCTACTGGACCAAAGCCCAGGCCACCTCATCCCACCAGCCACTAGAATGATGCCAGCACTAGGGT TGGTGGGAAGTGGCAACTCACTGTCCCCTTCCACACCCTCAGTCCTGCCAAGCCCCAGATGGGGGCCTCT CAGTGCCATTGACACTGCCCAAGAATGTCTAGAGGCCACGGAACGGTGCCAAGCACACAGTCCCTTTTGC CTCTTTCACGGGAGCAGGAGTCCCAGTGCCTGTCGTGGAAAGGGAGGAACATGCCAGGTCCCTGTGTGTC CTTGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTG TGTTAGTCACGTAGGCCTAAGAGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGG TCCTTGGCGTTTACAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC ACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCCTCTCTCCACCATGTTTTTATA GCTCTTGGGCTGGGA
Notes:	The probe template was PCR amplified from IMAGE:2123126 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template usi. T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2123126 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_002887 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source