Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:31317

Podn ( MGI:2674939)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317
euxassay_008604_01 euxassay_008604_02 euxassay_008604_03 euxassay_008604_04 euxassay_008604_05
EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317
euxassay_008604_06 euxassay_008604_07 euxassay_008604_08 euxassay_008604_09 euxassay_008604_10
EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317
euxassay_008604_11 euxassay_008604_12 euxassay_008604_13 euxassay_008604_14 euxassay_008604_15
EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317
euxassay_008604_16 euxassay_008604_17 euxassay_008604_18 euxassay_008604_19 euxassay_008604_20
EMAGE:31317 EMAGE:31317 EMAGE:31317 EMAGE:31317
euxassay_008604_21 euxassay_008604_22 euxassay_008604_23 euxassay_008604_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
forelimb digit 2 phalanx
strong strong
regionalstrong expression: see section 07 08 23 24
metanephros
strong strong
regionalstrong expression: see section 06 07 08 09 10 19 20 21
humerus
strong strong
regionalstrong expression: see section 04 05 06 07 22 23 24
forelimb digit 3 phalanx
strong strong
regionalstrong expression: see section 07 08 24
pelvic girdle skeleton
strong strong
regionalstrong expression: see section 10 11 19 20
axial skeleton
strong strong
regionalstrong expression: see section 09 10 11 12 13 14 15 16 17 18 19
lower leg mesenchyme
strong strong
regionalstrong expression: see section 01 02 03 04 05 06
forelimb digit 1 phalanx
strong strong
regionalstrong expression: see section 07 08 22 23 24
vibrissa
strong strong
regionalstrong expression: see section 06 07 08 09 10 11 24
naris
strong strong
regionalstrong expression: see section 14 15 16 18 19 20
telencephalon mantle layer
strong strong
regionalstrong expression: see section 06 07 09 10 11 12 13 14 17 18 19 20 21 22 23 24 moderate expression: see section 02 03 04 05 08
inner ear
strong strong
regionalstrong expression: see section 06 07 08 09 10 11 18 19 20 21
cornea epithelium
strong strong
regionalstrong expression: see section 01 02 03 04 05 06
mandible
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
rest of midgut mesentery
strong strong
regionalstrong expression: see section 12 13 14 15 16 17 18 19 20 21 22
forelimb digit 4 mesenchyme
strong strong
regionalstrong expression: see section 02 03
thyroid cartilage
strong strong
regionalstrong expression: see section 14 15
rib
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
urinary system mesentery
strong strong
regionalstrong expression: see section 13 14 15 16 17
tail paraxial mesenchyme
strong strong
regionalstrong expression: see section 13 14 15 16 17 18
forelimb digit 5 mesenchyme
strong strong
regionalstrong expression: see section 02 03
hyoid
strong strong
regionalstrong expression: see section 11 12 13 14 15 16 17 18
tongue muscle
strong strong
regionalstrong expression: see section 14 15 16 17 18 19
urinary system
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10 11 19 20 21 22 23 24
arytenoid cartilage
strong strong
regionalstrong expression: see section 14 15
forelimb digit 3 mesenchyme
strong strong
regionalstrong expression: see section 03 04 05 06
meckel's cartilage
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
midgut loop mesentery
strong strong
regionalstrong expression: see section 12 13 14 15 16 17 18 19
scapula
strong strong
regionalstrong expression: see section 02 03 04 05 23 24
maxilla
strong strong
regionalstrong expression: see section 08 09 10 11 12 14 15 16 17 19 20 21 22
diencephalon roof plate
strong strong
regionalstrong expression: see section 14 15 16
hindlimb digit 5 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06 08 23
duodenum caudal part mesentery
strong strong
regionalstrong expression: see section 12 13 14 15 16 17 18 19 20 21
hindlimb digit 4 mesenchyme
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 23
clavicle
strong strong
regionalstrong expression: see section 10 11 18 19 20
forelimb digit 2 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06
axial skeleton tail region
strong strong
regionalstrong expression: see section 13 14 15 16 17 18
nose
strong strong
regionalstrong expression: see section 09 10 11 12 17 18 19 20 21 22
forelimb digit 1 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06
choroid invagination
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 17 18 19 20 21
upper arm mesenchyme
strong strong
regionalstrong expression: see section 01 02
hindlimb digit 3 mesenchyme
strong strong
regionalstrong expression: see section 03 04 05 06 07 23 24
upper leg mesenchyme
strong strong
regionalstrong expression: see section 02 03 06 07 08 09 10 21 22 23 24
orbito-sphenoid
strong strong
regionalstrong expression: see section 04 06 07 08 09 10 20 21 22 23 24
hindlimb digit 1 mesenchyme
strong strong
regionalstrong expression: see section 04 07 24
olfactory cortex mantle layer
strong strong
regionalstrong expression: see section 10 11 12 13 14 17 18 19 20 21
tongue
strong strong
regionalstrong expression: see section 13
jejunum mesentery
strong strong
regionalstrong expression: see section 12 13 14 15 16 17 18 19 20 21
hindlimb digit 2 mesenchyme
strong strong
regionalstrong expression: see section 03 04 05 07 24
stomach mesentery
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 09 10 11 12
basioccipital bone
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
basisphenoid bone
strong strong
regionalstrong expression: see section 11 12 13 14 15 16 17 18
forearm mesenchyme
strong strong
regionalstrong expression: see section 01
forelimb digit 4 phalanx
strong strong
regionalstrong expression: see section 07 08
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9458
Entity Detected:Podn, ( MGI:2674939)
Sequence:sense strand is shown

>T9458
AAGAGGTGGCAGGAGGATGAGCATTAGCAGCCTGCATGTCTGCTGGGGGAGGTGCAACCGCGCTCTGCCT
GGCACGAAGAGGCACCTGGTCTGCTGGGCAGACCCCTGGGTAGGCCTTTCCTTCTCCACCTCTCCCTTTT
GCCCTGGAAAAGCCCAAATGACCAGATCCCGGGCTCACAGGGCGAACACCACTGGGAAGGGCCCGGGCTG
CTCTGGAAAAAGTCATCAATGACTGGTCTGGGGCTTCTGCCCCCTTCCGTACACTCTCGGAGCCCTTGGC
CCAGTCTTCGGTGTGTAAGGTGCTGGCAAGGGCCAGTGGCATCAGATCCCCCAGAGCTGGGGTTACAGGT
GGTTGTGAGTCATCCCAGAGAGTGCTGGGCTCAGTCTTCTGTGAGCAGAGCACTGCTCTTAACAGATAAG
CTTGTGGACTTTTATGGAGACAAGCCAAAGGTGAGAGAAGAAAGCCAGCCTGTCCAGCACCATGGCTGGC
AGCAGGGGCCTGCCACTCCTACTGCTGGTGCTTCAGCTCTTCCTGGGCCCTGTGCTGCCTGTGAGGGCAC
CTGTGTTTGGCCGAAGTGACACCCCCACCCTGAGCCCCGAGGAGAATGAATTTGTGGAGGAAGAGAATCA
GCCAGTGCTGGTTCTGAGCTCCGAGGAGCCAGAGCCTGGCCCAGCCACTGTCGACTGTCCCCGAGATTGT
GCCTGTTCCCAGGAAGGTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCG
AGCACACCAACCATCTCTCCTTGCAGAACAACCAGCTGGAGAAGATCTACCCCGAGGAGCTGTCCCGGCT
GCAGCGGCTGGAGACGCTGAACCTGCAGAACAACCGCCTGACATCCCGAGGGCTCCCAGAGGAGGCATTT
GAGCATCTTACTAGCCTCAATTACCTGTACCTGGCCAACAACAAGCTGACACTGGCACCCCGATTCCTGC
CAAACGCCCTGATCAGTGTGGACTTTGCTGCCAATTATCTCACTAAGATCTATGGACTCACCTTTGGCCA
AAAGCCAAATCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATG
TTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACC
TGCCACCCGCTCTGTACAAGCTGCACCTCAAGAACAATAAGCTAGAGAAGATCCCCCCTGGGGCCTTCAG
TGAGCTGAGCAACCTACGGGAACTCTACCTGCAGAACAACTACCTGACCGACGAGGGTCTGGACAACGAG
ACCTTCTGGAAGCTGTCCAGCCTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGG
GTCTTCCCCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAGCTGATGTGCT
GACACCCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCA
CTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCTGGAACGTGTGCCCA
GCGGCCTGCCCCGCCGAGTGCGCACCCTCATGATCCTGCACAACCAGATTACAGGCATAGGCCGTGAGGA
CTTCGCTACCACCTACTTCCTGGAAGAGCTCAACCTCAGCTACAACCGCATCACCAGCCCACAGATGCAC
CGAGATGCCTTCCGCAAGCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCAAACACTGC
CTCCAGGCCTGCCGAAAAACGTACACGTGCTCAAGGTCAAGCGGAATGAGCTGGCTGCCCTGGCACGTGG
GGCACTAGCTGGCATGGCCCAGCTTCGGGAACTCTACCTCACAGGCAACCGACTGCGAAGCCGGGCCCTG
GGACCCCGTGCCTGGGTGGACCTTGCTGGTCTGCAGCTGCTGGACATCGCTGGGAATCAGCTCACAGAGG
TCCCTGAGGGGCTCCCCCCATCTCTGGAGTATCTGTACCTGCAGAATAACAAGATTAGTGCCGTTCCTGC
CAACGCCTTTGACTCCACTCCCAACCTTAAGGGGATCTTTCTCAGGTTCAACAAGCTGGCTGTGGGCTCC
GTGGTGGAAAGCGCCTTCCGGAGGCTGAAACACCTGCAGGTCTTGGACATTGAAGGCAACTTTGAGTTTG
GTAATGGTTCCAAGGACAAAGATGAGGAAGAGGAAGAAGAGGAGGAAGAGGAAGATGAGGAAGAGGAAAC
TAGATAGGACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGC
CTGTGCCCCATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGG
GCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTCACACAGTCAGACACGTGCAGATACCACT
TCACCACCACGCCCCCAGTTTGGCCACGTAGATAGCCAGCTGCATATGACCTTCCAAACTGGCTCTCTGC
ACAATCTCACACTGACACACACACACACACACACACACACACACACACACACACACACACACACACACCC
TCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATTCACTTACACAGAGT
GACCTATGCTACCAAAAGCTCTTGCTTCCAGACAGCTCTGGTTGGAAACAGTTGGCCATGTGCCTTGTCC
TCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACTCTTTGAGA
CGCAAAAGCTGGCTTTTGTTTTGTGCCTTCCCTATGGGGACTTGAACCTTCTGCCTTCGACCACAGCCTC
ACCTCCTCCCCCCAGGTGCTGGGCACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCAC
AGGCACTTTCAGAGAACAGCCTCAAGAAGGCTTGGAAGAGAAAGAGGCAGCAGTGCGTGGTGGGGGTGGG
GTGGGGTGGTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTTTAA
GGAGAAAAAAAAATATATATGAAGATAAAAATCTCAAAGCTGATTTTTTTCCTGTTACAGAAAAACTAAT
ATAAAGTATTATCCCTGCCCTTGCAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30609151 using vector (pYX-Asc) specific primers. Forward Primer - name:RZ. T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30609151 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_008604 same experiment
 EMAGE:31856 same embryo
 EMAGE:31891 same embryo
 EMAGE:29471 same embryo
 EMAGE:31893 same embryo
 EMAGE:30623 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS