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EMAGE:31424

Cdh2 cadherin 2 ( MGI:88355)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424
euxassay_003128_01 euxassay_003128_02 euxassay_003128_03 euxassay_003128_04 euxassay_003128_05
EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424
euxassay_003128_06 euxassay_003128_07 euxassay_003128_08 euxassay_003128_09 euxassay_003128_10
EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424
euxassay_003128_11 euxassay_003128_12 euxassay_003128_13 euxassay_003128_14 euxassay_003128_15
EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424
euxassay_003128_16 euxassay_003128_17 euxassay_003128_18 euxassay_003128_19 euxassay_003128_20
EMAGE:31424 EMAGE:31424 EMAGE:31424 EMAGE:31424
euxassay_003128_21 euxassay_003128_22 euxassay_003128_23 euxassay_003128_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
pituitary gland
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16
vestibulocochlear viii ganglion
strong strong
regionalstrong expression: see section 07 08 moderate expression: see section 09 18 19 20
cervico-thoracic ganglion
moderate moderate
regionalmoderate expression: see section 10 11 17
axial skeleton
moderate moderate
regionalmoderate expression: see section 13 14 15 16 17 18
thoracic ganglion
moderate moderate
regionalmoderate expression: see section 14 15
facial vii ganglion
strong strong
regionalstrong expression: see section 05 moderate expression: see section 06 07 21 22 23
lower jaw molar
moderate moderate
regionalmoderate expression: see section 06 09 10 11 12 19 20 21 22
vagus x ganglion
moderate moderate
regionalmoderate expression: see section 09 18
upper jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12 19 20 21 22
trigeminal v ganglion
strong strong
regionalstrong expression: see section 04 05 moderate expression: see section 06 07 08 09 10 19 20 21 22 23
vibrissa
strong strong
regionalstrong expression: see section 05 06 07 moderate expression: see section 08 23 24
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 10 11 12 13 14 15 16 17 18 19 20 21
cervical ganglion
moderate moderate
regionalmoderate expression: see section 10 17
orbito-sphenoid
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 23 24
neural retina
moderate moderate
homogeneousmoderate expression: see section 01 02 03 04 05 24
cranium
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 22 23 24
frontal bone primordium
moderate moderate
regionalmoderate expression: see section 01
rib
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 19 20 21 22 23 24
foot mesenchyme
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11
glossopharyngeal ix ganglion
strong strong
regionalstrong expression: see section 07 08 moderate expression: see section 19
foot epidermis
moderate moderate
regionalmoderate expression: see section 08 09 10 11
dorsal root ganglion
strong strong
regionalstrong expression: see section 07 08 09 10 11 12 13 14 15 17 18 19 20
meckel's cartilage
moderate moderate
regionalmoderate expression: see section 04 05 06 07 08 09 10 11 12 19 20 21 22 23 24
basisphenoid bone
moderate moderate
regionalmoderate expression: see section 03
hand mesenchyme
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06
renal cortex
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 13 19 20 21 22 23
nucleus pulposus
moderate moderate
regionalmoderate expression: see section 14 15
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 13 14 17 18
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 13 14 15 17 18
exoccipital bone
moderate moderate
regionalmoderate expression: see section 01 02 04 05
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4893
Entity Detected:Cdh2, cadherin 2 ( MGI:88355)
Sequence:sense strand is shown

>T4893
CCCACGCGTCCGGCCGCTGCCGCTTCTGCTGCCTCTGCTGCCGCCGCCGCCGCCTCCGGCTCCTCGCTCG
GCCCCTCTCCGCCTCCATGTGCCGGATAGCGGGAGCGCCGCGGACCCTGCTGCCGCTTCTGGCGGCCTTG
CTTCAGGCGTCTGTGGAGGCTTCTGGTGAAATTGCATTATGCAAGACTGGATTTCCTGAAGATGTTTACA
GCGCAGTCTTACCGAAGGATGTGCACGAAGGACAGCCCCTTCTCAATGTGAAATTCAGCAACTGCAATAG
AAAAAGGAAAGTTCAGTATGAAAGCAGCGAGCCAGCAGATTTCAAGGTGGACGAGGACGGCACGGTGTAT
GCTGTGAGAAGCTTCCCTCTCACTGCAGAGCAGGCAAAGTTCCTGATATATGCCCAAGACAAAGAAACCC
AGGAAAAGTGGCAGGTAGCTGTAAACCTGAGCCGGGAGCCAACCCTGACTGAGGAGCCTATGAAGGAACC
ACATGAAATTGAAGAAATAGTATTCCCTAGACAACTTGCCAAGCACAGTGGAGCTCTACAAAGGCAGAAG
AGAGACTGGGTCATCCCGCCAATCAACTTGCCAGAAAACTCCAGAGGACCCTTTCCTCAAGAGCTTGTCA
GAATCAGGTCTGATAGAGATAAAAACCTTTCCCTGAGATACAGCGTCACTGGGCCAGGAGCTGACCAGCC
TCCAACGGGCATCTTCATTATCAACCCCATCTCAGGACAGCTGTCAGTCACAAAGCCTCTGGATCGAGAG
CTGATAGCCCGGTTTCACTTGAGAGCACATGCAGTGGACATCAATGGCAATCAAGTGGAGAACCCCATTG
ACATTGTCATCAATGTTATTGACATGAATGATAACAGACCTGAGTTTCTGCACCAGGTTTGGAATGGGTC
TGTTCCAGAGGGATCAAAGCCTGGGACGTATGTGATGACGGTCACTGCCATTGATGCGGATGATCCAAAT
GCCCTGAATGGAATGCTGCGGTACAGGATCCTGTCCCAGGCGCCCAGCACACCTTCACCCAACATGTTTA
CAATCAACAATGAGACTGGGGACATCATCACTGTGGCAGCTGGTCTGGATCGAGAGAAAGTGCAACAGTA
TACGTTAATAATTCAAGCCACAGACATGGAAGGCAATCCCACTTATGGCCTTTCAAACACAGCCACAGCC
GTCATCACGGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACTTTCTACGGAGAAGTCC
CTGAGAACAGGGTGGACGTCATTGTAGCCAACCTAACTGTCACGGACAAAGATCAGCCCCACACGCCGGC
CTGGAATGCGGCATACAGAATCAGTGGTGGAGACCCTACAGGAAGGTTTGCCATCCTGACAGACCCCAAC
AGCAATGATGGGCTAGTCACAGTGGTAAAACCAATTGACTTTGAAACGAATAGGATGTTTGTCCTTACTG
TTGCTGCAGAAAACCAAGTGCCATTAGCTAAAGGCATTCAGCACCCACCTCAGTCGACAGCCACTGTGTC
TGTGACAGTTATTGATGTCAATGAAAATCCTTATTTTGCCCCAAATCCTAAAATCATTCGCCAAGAGGAA
GGCCTCCACGCAGGTACCATGCTGACCACGCTCACTGCTCAGGACCCCGATCGATATATGCAACAGAATA
TCAGATACACAAAATTGTCTGATCCTGCCAACTGGCTGAAAATAGACCCCGTGAATGGGCAGATCACTAC
TATTGCCGTTTTGGACAGAGAATCGCCAAATGTAAAAAACAACATCTATAATGCTACCTTCCTTGCTTCT
GACAATGGAATCCCGCCTATGAGTGGGACAGGAACACTGCAAATCTATTTACTTGATATCAATGACAACG
CCCCTCAGGTGTTACCTCAAGAGGCAGAGACCTGTGAAACTCCAGAACCCAACTCAATTAACATCACAGC
ACTTGATTATGACATAGACCCAAACGCCGGGCCATTCGCGTTTGATCTTCCCTTATCTCCAGTGACTATT
AAAAGAAACTGGACCATCAACCGGCTTAATGGTGATTTTGCTCAGCTCAATTTAAAGATAAAATTTTTGG
AAGCTGGTATCTATGAAGTTCCCATCATTATCACAGATTCAGGGAATCCCCCCAAGTCCAACATTTCCAT
CCTGCGTGTGAAAGTTTGCCAGTGTGACTCCAATGGAGACTGCACGGACGTGGACAGGATCGTGGGTGCA
GGGCTTGGCACGGGTGCCATCATCGCTATCCTTCTGTGTATCATCATCCTGCTGATCCTTGTTCTCATGT
TTGTGGTATGGATGAAACGGCGGGATAAAGAGCGCCAAGCCAAGCAGCTTTTAATTGACCCAGAAGATGA
TGTAAGAGATAATATATTGAAATATGATGAAGAAGGTGGAGGAGAAGAAGACCAGGACTATGACTTGAGC
CAGCTCCAGCAACCAGATACTGTGGAGCCTGATGCCATCAAGCCCGTGGGAATCAGACGGCTAGACGAGA
GGCCTATCCATGCTGAGCCACAGTACCCAGTCCGATCCGCAGCCCCACACCCTGGGGATATTGGGGACTT
CATTAATGAGGGCCTTAAAGCTGCTGACAACGACCCCACGGCGCCACCGTATGACTCCCTCTTAGTCTTT
GACTACGAGGGCAGCGGCTCCACGGCTGGCTCCTTGAGCTCCCTCAACTCCTCCAGTAGCGGTGGGGACC
AGGACTATGACTACCTGAATGACTGGGGACCCCGCTTCAAGAAACTGGCGGACATGTACGGCGGTGGTGA
CGACTGAACGGCAGGACGGACTTGGCTTTTGGACAAGTATGAACAGTTTCACCTGATATTCCCAAAAAAA
AGCATACAGAAGCTAGGCTTTAACTCTGTAGTCCACTAGCACCGTGCTTGCTGGAGGCTTTGGCGTAGGC
TGCGAACCAGTTTGGGCTCCCAGGGAATATCAGTGATCCAATACTGTCTGGAAAACACCGAGCTCAGCTA
CACTTGAATTTTACAGTAAAGAAGCACTGGGATTTATGTGCCTTTTTGTACCTTTTTCAGATTGGAATTA
GTTTTCTGTTTAAGGCTTTAATGGTACTGATTTCTGAAATGATAAGGAAAAGACAAAATATTTTGTGGCG
GGAGCAGAAAGTTAAATGTGATACGCTTCAACCCACTTTTGTTACAATGCATTTGCTTTTGTTAAGATAC
AGAACGAAACAACCAGATTAAAAAAAATTAACTCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5100313 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5100313 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003128 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS