EMAGE mouse gene expression spatial database

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EMAGE:31599

Dnajc6 ( MGI:1919935)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_006348_01	euxassay_006348_02	euxassay_006348_03	euxassay_006348_04	euxassay_006348_05

euxassay_006348_06	euxassay_006348_07	euxassay_006348_08	euxassay_006348_09	euxassay_006348_10

euxassay_006348_11	euxassay_006348_12	euxassay_006348_13	euxassay_006348_14	euxassay_006348_15

euxassay_006348_16	euxassay_006348_17	euxassay_006348_18	euxassay_006348_19	euxassay_006348_20

euxassay_006348_21	euxassay_006348_22	euxassay_006348_23	euxassay_006348_24

View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

vestibulocochlear viii ganglion

strong

homogeneous

strong expression: see section 06 07 08 17 18

cervico-thoracic ganglion

strong

regional

strong expression: see section 09 10 14 15

rest of cerebellum mantle layer

strong

regional

strong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

rest of cerebellum marginal layer

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

trigeminal v nerve

strong

homogeneous

strong expression: see section 09 16

thoracic ganglion

strong

regional

strong expression: see section 10 11 12 13 14

facial vii ganglion

strong

homogeneous

strong expression: see section 04 05 06 07 18 19 20

vagus x ganglion

strong

homogeneous

strong expression: see section 07 17

thymus primordium

strong

regional

strong expression: see section 10 11 12 13 14

trigeminal v ganglion

strong

homogeneous

strong expression: see section 03 04 05 06 07 08 09 16 17 18 19 20 21

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 08 09 10 11 12 14 15 16 17 18

genital tubercle of male

strong

regional

strong expression: see section 10 13

telencephalon marginal layer

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

midbrain marginal layer

strong

regional

strong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18

cervical ganglion

strong

regional

strong expression: see section 08 16 17

esophagus epithelium

moderate

regional

moderate expression: see section 11 12

telencephalon mantle layer

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

midbrain mantle layer

strong

regional

strong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18

neural retina

strong

regional

strong expression: see section 01 02 03 04 22 23 24

spinal cord mantle layer

strong

regional

strong expression: see section 08 09 10 11 12 13 14 15

spinal cord marginal layer

strong

regional

strong expression: see section 08 09 10 11 12 13 14 15

stomach

moderate

spotted

moderate expression: see section 02 03 04 05 06 07 08

pons marginal layer

strong

regional

strong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19

glossopharyngeal ix ganglion

strong

homogeneous

strong expression: see section 06 07 18

pons mantle layer

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

midgut

moderate

spotted

moderate expression: see section 09 10 11 12 13 14 15 16 17 18 19 20 21

medulla oblongata basal plate marginal layer

strong

regional

strong expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18

dorsal root ganglion

strong

regional

strong expression: see section 07 08 09 12 13 14 15 16 17

medulla oblongata basal plate mantle layer

strong

regional

strong expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18

diencephalon lateral wall marginal layer

strong

regional

strong expression: see section 07 08 09 10 11 12 13 14 15 16 17 18

diencephalon lateral wall mantle layer

strong

regional

strong expression: see section 07 08 09 10 11 12 13 14 15 16 17 18

pharynx epithelium

moderate

regional

moderate expression: see section 10 11 12 13 14

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8817
Entity Detected:	Dnajc6, ( MGI:1919935)
Sequence:	sense strand is shown >T8817 TCTGTCCCGTCTTCCCCTCCCCCTTCCTTTCCCAGGTTGATTTTTTTTTCTTCCCCCTCTTCTCCGGGCT TGCCCATGAGCCTCCTCGGGAGCTACCGGAAAAAGACCAGCAGCGATGGTTATGAATCTTTGCAGCTGGT GGACAGTCACGGGGACTCGAGCGCACGGGGCGCGGCGGCTGGCACGCAGAGGGCGACCGCGGGCGCGGTG CGTAGTCCCGCCCGGCAGCCTCCGCACCGCGCCAGCACCACGGACAGCTCAGGTGCCTCGTCTCCAGACA TGGAGCCCAGCTATGGGGGAGGCCTTTTTGACATGGTGAAAGGCGGTGCAGGGAGGCTATTCAGTAACCT GAAGGACAACTTGAAAGACACTCTCAAAGATACATCCTCCAGGGTCATCCAGTCTGTTAGCAGCTACACA AAGGGAGACCTAGACTTTACTTACGTCACCTCCAGGATTATCGTGATGTCCTTTCCTGTGGATAGTGTTG ACATAGGATTCAGGAATCAGGTTGATGACATCCGTAGCTTTTTGGATTCCAGACATCTTGACCACTACAC AGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGG CCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAGGAATATGTATAACTGGCTACTGC AGAACCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGC TATGTTCATTTTCTGTAATCTCTACTCCACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACCA GGAATTGGACTGTCTCCGTCTCACAGGAGGTACTTAGGCTACATGTGCGACCTACTTGCAGATAAGCCCT ACCGCCCTCACTTCAAGCCACTCACGATCAAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAATAAGCA GAGAAATGGGTGCCGCCCTTACTGTGACGTTCTGATTGGAGAAACTAAAATATATTCAACGTGCACAGAC TTTGAACGAATGAAAGAATACCGTGTCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACAGTCCAAG GTGATGTCATCGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAA CACACAGATATTCCAGCTCCAGTTTCATTCTGGGTTTATACCACTGGACACGACAGTTTTAAAGTTCACC AAGCCTGAGCTGGATGCATGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGATATAG AAGTCCAGCCCCAAGACAAAGTGATCGACTTAACTCCACCATGGGAACACTACTGCACAAAAGATGTGAA CCCCAGCATCCTCTTCTCCTCTCAGCAGGAGCATCAGGACACTCTGGCCTTAGGGGGTCAGGCTCCAGCC GATCTCCCACCAGACCATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCCTCTCTCTGTTGGCAAGATC AGAAATCAGAGAAGTCACGCTGTGAGGAGGACCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTCAGA TGATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAG CCAGGCAAAAAGCAGCAGGAGCCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTCCTGGGCCTGGAAG GGTCTGATGTGAGCACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAGTGACCT GTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTAGAAGATGTGTTTCATCCT AGTGGACCTGTGTCTGCACAGTCCACACCGCGCCGAACCGCCACCTCCGCCTCTGCATCGCCAACCCTAA GAGTGGGAGAAGGTGCCACCTTTGACCCTTTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTGGG CTCCTTTCTAAACACATCCAGTGCTTCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCCTTCCCCTACA GTGCATGCTTCTAGTACTCCTGCTGTGAACATCCAGCCCGACATTGCTGGAGGTTGGGACTGGCACACCA AACCAGGAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAGCCCGACAGGCTCATCACATGGCACCCC CACCCATCAGAGCAAGCCCCAGACTCTGGATCCCTTCGCTGACCTGGGGACACTAGGTAGCTCTTCATTT GCCAGCAAACCTACCACCCCAACTGGATTGGGTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAGCAT CCCCCCAGCCAATGGGTGGAGGGTGGCAGCAGCCAGCCGGCTACAACTGGCAGCAGACACAGTCTAAGCC ACAGTCCAGTATGCCTCACTCCTCCCCTCAGAACCGACCCAATTACAACGTGAGCTTCTCGGCTATGCCT GCAGGGCAGAGCGAACGTGGAAAAGGATCTACTAACTTGGAAGGGAAACAAAAGGCTGCTGACTTTGAAG ATCTGCTTTCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAGGGGCCTCGAACAATAGCTGAGATGAG AAAGGAGGAGATGGCTAAGGAAATGGATCCTGAAAAACTAAAGATCCTGGAGTGGATAGAGGGCAAAGAG AGAAACATCAGAGCTCTGCTTTCCACAATGCACACCGTGCTGTGGGCTGGGGAGACCAAATGGAAACCCG TGGGCATGGCGGATCTGGTGACGCCGGAGCAAGTGAAGAAGGTGTACAGGAGGGCTGTGCTAGTGGTGCA CCCTGACAAGGCAACTGGGCAACCCTATGAACAATACGCAAAGATGATTTTCATGGAGCTAAATGATGCC TGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAATTTGTGAGCTTTTCTATGCTGGCTGCAG TCCTGTGATAATGCTTAGTGTGTACCACAGTTCTGAGATTTTCACAGATGAACCAAAAATTCTAGTAATG TATTTCCAATACTAAACTGTTAATTTCCTCGTGAATTCACTTCTCATGATAAGGAATGTGAACGTTTGGT TTCTTGAAGTCCATAGCACCAAGAGGAACTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTG TCCTTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAAGGTGAAGGCATGA CATCCATCTCACTGTCTGAGATTAAGATTTATGAGTGGACATTATGATAATGGGATTGCGTAATGGTTTT AAGGAATTGATTTAGGGATTGTGTATGTGTGGGTTTTTTGTTTTGTTTTGTTTTTAAAGATGTAATTTGA GGAATGGCTTTACACAAACTCCAAGAATATCACCAACCAAGTATTTTTTAATGGAAACTTACTGAAGCCT TTAGCTTCTTCAGTGTGTGTCCTTTGGTCAAGAGCATTAACAATTATTGAAGTGACTTAACGGTGGAAAG GGGTTATGTAGAAATTGAGGAATTACCCCTTTCTTTTCCTGGATGAGCTATAACCCAAGCACATGATAAA GAAATCAGGAGCCCTAAGATGCCAAATCTTGACTCCAGGTCAGGACATTGGGGTACCAGCTCCTTTTTCC TTTAAGTTTGCTGTTGATTGAAGAAAAACTCTTGAACGATACCACCACCATAATTCCAAACCTATTTGAA ATCCCCTTCTAATTGTTGCCATGAGGCTCAGTGCTCTTTCTTTTGCTTAGCCAAGAAAACATTCTTCATG GGTGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAGC CAGGGGAAAAACAGAGAAGATAACACTGAGTGCTATTTAGAAGGGTTTGGTTGGGGATAGAGCTGTGGTG TGCCTTCAGATCCAATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTGGCC CCTCCCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATGCAAGAATGAAAC TTTCCCAGACTGACATCAGCTGGTGGCAGTTCACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGC AGCTCCTACTGCTGGGACTTCGCTAGGTCTCTGGGTGAGCACATGTGCGGCATCTATTTATCTATCCATA CCTGCATATGAATATGTCTAACGTGCACACACACATTCACAAAGCAGGTGGTCAAAAAGATTATCATGCT GATCTTAAAAGGTTCACATTCAATATTGTGAAAAGCTTTCAGAAGTTGTGTTTCCAAGACAATCATTTTG TTTGTTTGTTTCTGTTTTAATATTCTTGTGACAACTAAGTTGAAAAAGCAGCATGTCAGAAATAATTTTG ATTCTATATAGACCTCTTCTCTTTTTTTAAATTATAAAAGTTTATTATTTATTTTACCTTTAACTGATAA TGTGAAATTCTCAAAAATATGTTCTCTTTAAAATATACAGTTGTAAACTCTTCAAAGTAAACATAACAAT CTAGGTGTTATTTATTAACGTATTATACAATGATGTCTGACCCAGTATGTGCTTGTCCTATTTAAGATTG GAATGTGAGACATGTTGCTGTGACCTGTTTTGTTTTGTTTTTTTGTTTGTTTTGTTTTTGCCTCATTCCA TATTTGTAGATATTGTGTGAACTACAGTATATAATGACAATAATTAAGAGGATATTATGTGGCTGTCACA TACATTTTGAGATGATAGAACTATATTAGCTTTGTGTCATGTTTGCATAGGTCATTAACGTTCACGGTTT AAATACCATTAAATGTTATGCGATTAGCAATGAGGAAGAACCCTTCCTTAAATCTGGGAGTTTCCCACCG CTCTTTCCCTGATGCATTATGATCCTGGACGCCTGTCTATCTCAAAACTCTTAACACGTGCAGACCAATA GGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACCATCTCATTCATA TTTATTGTAATATATTTTTGTTTTGTAAATACATGAAACAAAACAAAATGTCATTGTTCTAAAATATTTG TAATGTATATTAAAAAGGATACAAAATAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6409942 using vector (pYX-Asc) specific primers. Forward Primer - name:RZ. T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6409942 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_006348 same experiment
	EMAGE:30034 same embryo
	EMAGE:30007 same embryo
	EMAGE:30026 same embryo
	EMAGE:31126 same embryo
	EMAGE:31148 same embryo
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source