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EMAGE:31636

Emb embigin ( MGI:95321)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636
euxassay_003052_01 euxassay_003052_02 euxassay_003052_03 euxassay_003052_04 euxassay_003052_05
EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636
euxassay_003052_06 euxassay_003052_07 euxassay_003052_08 euxassay_003052_09 euxassay_003052_10
EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636
euxassay_003052_11 euxassay_003052_12 euxassay_003052_13 euxassay_003052_14 euxassay_003052_15
EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636 EMAGE:31636
euxassay_003052_16 euxassay_003052_17 euxassay_003052_18 euxassay_003052_19 euxassay_003052_20
EMAGE:31636 EMAGE:31636 EMAGE:31636
euxassay_003052_21 euxassay_003052_22 euxassay_003052_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
metencephalon basal plate
moderate moderate
regionalmoderate expression: see section 08 17 18
pituitary gland
strong strong
regionalstrong expression: see section 11 12 13 14 15
vestibulocochlear viii ganglion
moderate moderate
regionalmoderate expression: see section 20
cervico-thoracic ganglion
moderate moderate
regionalmoderate expression: see section 10
4th ventricle lateral recess
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 15 16 17 18 19 moderate expression: see section 04 05 06 07 20 21 22
thoracic ganglion
moderate moderate
regionalmoderate expression: see section 13 14 15
pancreas
strong strong
regionalstrong expression: see section 10 11 12 13 14 16 17 18
facial vii ganglion
strong strong
regionalstrong expression: see section 05 06 moderate expression: see section 07 20 21
lower jaw molar
strong strong
regionalstrong expression: see section 06 moderate expression: see section 07 08 19 20
vagus x ganglion
strong strong
regionalstrong expression: see section 09 moderate expression: see section 17
pharyngo-tympanic tube
strong strong
regionalstrong expression: see section 01 02 03 04 22 23
upper jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 19 20
trachea
strong strong
regionalstrong expression: see section 13 14 15
thymus primordium
moderate moderate
homogeneousmoderate expression: see section 11 12 13 14 15
trigeminal v ganglion
strong strong
regionalstrong expression: see section 05 06 07 08 09 10 17 18 19 moderate expression: see section 04 20 21 22 23
kidney pelvis
strong strong
regionalstrong expression: see section 19
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 09 10 11 12 13 14 16 17 18 19 moderate expression: see section 15
cervical ganglion
moderate moderate
regionalmoderate expression: see section 10 16
naris
strong strong
regionalstrong expression: see section 11 12 13 14 16 17 18
lateral ventricle choroid plexus
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 15 16 17 18 19 20
neural retina
moderate moderate
homogeneousmoderate expression: see section 03 04 05 22 23
ventral grey horn
moderate moderate
regionalmoderate expression: see section 10 17 weak expression: see section 11 12 13 14 15 16
stomach
strong strong
regionalstrong expression: see section 09 10 11 12 moderate expression: see section 05 06 07 08
kidney calyx
strong strong
regionalstrong expression: see section 08 09 10 11 12 17 18 20 21
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 08 18
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 13 14 15 16 17 18 19
submandibular gland primordium
strong strong
regionalstrong expression: see section 07 08 09 10 16 17 18 19
medulla oblongata basal plate
moderate moderate
regionalmoderate expression: see section 09 10 11 16 17
adrenal gland
strong strong
homogeneousstrong expression: see section 09 10 11 17 18 19
liver lobe
strong strong
single cellstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
lower jaw incisor
strong strong
regionalstrong expression: see section 11 12 13
upper jaw incisor
strong strong
regionalstrong expression: see section 12 13 16
glans of male genital tubercle
strong strong
regionalstrong expression: see section 15 16 17 moderate expression: see section 13 14 18 19
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4211
Entity Detected:Emb, embigin ( MGI:95321)
Sequence:sense strand is shown

>T4211
CCCAGTTACCAGCAAGTGTACACAGGGACCAACGGAGACGGATCGCAGCGAGCTGAGGGTGCCTTAGCGA
CCTCCTGGACAGACCCGCCCGCGCCATGCGCTCGCACACTGGCCTGAGGGCGCTTGTGGCGCCTGGTTAC
CCGCTCCTCCTTCTATGTCTTCTGGCGGCGACGCGCCCTGATCCGGCTGAGGGCGATCCCACAGATCCAA
CTTTTACAAGTCTACCTGTTCGAGAAGAAATGATGGCGAAATACTCAAACCTTTCCTTAAAGAGCTGTAA
TATCTCAGTGACGGAAAAGTCCAATGTATCAGTAGAAGAGAACGTAATTTTGGAAAAGCCTTCTCATGTG
GAACTCAAATGCGTGTACACAGCAACTAAGGATTTGAACTTGATGAATGTGACTTGGAAGAAAGATGATG
AGCCCCTTGAGACTACGGGTGACTTCAATACAACTAAAATGGGCAACACCTTAACCAGTCAGTACAGGTT
CATCGTTTTTAATAGCAAACAATTGGGAAAATATTCTTGTGTCTTTGGAGAAAAGGAACTAAGAGGGACC
TTTAACATCCACGTACCCAAAGCTCATGGGAAAAAAAAGTCGTTGATCGCTTACGTGGGGGATTCTACTG
TGCTGAAGTGTGTATGTCAAGATTGTCTTCCTTTAAATTGGACTTGGTACATGGGTAATGAAACCGCACA
GGTTCCCATTGACGCTCACTCGAATGAAAAGTATATCATCAATGGTTCCCATGCCAATGAAACAAGGCTC
AAGATTAAGCATCTTTTGGAGGAAGATGGAGGATCCTACTGGTGTCGTGCCACCTTCCAGTTAGGGGAGA
GTGAGGAGCAGAATGAGCTGGTTGTGCTGAGCTTCCTGGTGCCCCTCAAGCCATTTCTGGCCATACTTGC
CGAAGTCATCCTCTTGGTGGCCATCATTCTGCTTTGTGAAGTGTACACACACAAGAAAAAGAATGACCCA
GATGCTGGGAAAGAATTTGAACAAATTGAACAGCTGAAATCAGATGATAGCAATGGCATAGAAAACAATG
TCCCCCGGTACAGAAAAACTGACTCTGCAGATCAGTGAATACAGAAAGAGCATCTCGCCCTGGGAAGAAG
TACAGCGTTGGAGTTTGTACTTCAGCTTCCTTATTTTAGATTTTTAAAAGACAAAGATGCCCTCAACGTG
CACAGAAGTAGCTTTATGAACAATATAGTCCATCTCCTACCTAAAGATGTACTTTCATTTTGTAATTGCT
TTCCATTAAAGCAAGGTCAATTGTTTCAGCTGTGTTCTGTGAGCTGTAACCTAGATAATAAACTCCCCTC
TGTGGGTACAGGGTGGACACCAGCAAAATCACTTAATAATCCACAAATAAATATCGCCGAAGATCTGTTT
ATTACCAAAGAATTTATTAAAGAGAAAGCGTTTGCCAGTTGTCTTAAGTGTTTGCCTCCACCAGACATCT
TACCTATAGAAGTATTTATCACAGTTTTCATGTGAAGTGTATCCAGTGTTGAGTGTGATTTCTCTAGGAA
ATGGAAAGTATGCTTTCAATATCGGTGGCTACACTGCAGTCTAGACACTAAGATAAACTTGTGCTCTATA
AATAATGGTGCAAAGTAAGGGAGTTCAAATGCTTGTGCCATGGCCACTACATTACCAGAGCTTCTCATCT
TCATTGCACTCATTTCTGCTCTTTCTATCCCAAGCCGAAGAGCTTCCCAGCCTTAAGTAGAACATTTTCC
TTGTTCTTTGTCATTGGGGTTTGGACTTCAATAGTCTTCAGAGGCCAGATCCACGTTGTCACAGTACAAC
CCCGCTCGCTACCTGCATGCCTTTGTGGCTCATGGTTTCTGGGTGCCTTTATGTGCCATCTCTTTCCTGG
TACCATACCTGGCTAAAATGCATTCTTAGTGTTTTCCAATAATAATTCCTTTGTCTAGTATACAGGAGGA
CTAGTGCACTATCTTTATGTTGCTGCGAATGCCTTAGACTTAACTTCAAAATTGTATCTGAGATACTTTA
TGAACTTAGAACCAAATCACGTCAGAATTTTAATGGACATGGAAACTTGTCAATGGTTTTAAATGAAATA
AAATGTGCCTTGGATGGTTGGATTAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4500922 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4500922 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003052 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS