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EMAGE:31688

Cldn1 ( MGI:1276109)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688
euxassay_004814_01 euxassay_004814_02 euxassay_004814_03 euxassay_004814_04 euxassay_004814_05
EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688
euxassay_004814_06 euxassay_004814_07 euxassay_004814_08 euxassay_004814_09 euxassay_004814_10
EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688
euxassay_004814_11 euxassay_004814_12 euxassay_004814_13 euxassay_004814_14 euxassay_004814_15
EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688 EMAGE:31688
euxassay_004814_16 euxassay_004814_17 euxassay_004814_18 euxassay_004814_19 euxassay_004814_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
axial skeleton lumbar region
weak weak
regionalweak expression: see section 05 06 07 08 09
axial skeleton thoracic region
weak weak
regionalweak expression: see section 04 06 07
kidney calyx
moderate moderate
regionalmoderate expression: see section 12 13 weak expression: see section 05 06 11
tongue
weak weak
regionalweak expression: see section 14
axial skeleton sacral region
weak weak
regionalweak expression: see section 08 09 10 11 12
4th ventricle lateral recess
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16
tongue muscle
weak weak
regionalweak expression: see section 09 10 11 12 13
esophagus
weak weak
regionalweak expression: see section 07 08
submandibular gland primordium
weak weak
regionalweak expression: see section 05 06 12 13 14
axial skeleton cervical region
weak weak
regionalweak expression: see section 04 07 10 11
vibrissa
moderate moderate
regionalmoderate expression: see section 05 06 07 08 18 19 20
epidermis
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
lateral ventricle choroid plexus
strong strong
regionalstrong expression: see section 05 06 08 09 10 11 12 13 14 15 16
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 09 10 13 14
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 10 14
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6075
Entity Detected:Cldn1, ( MGI:1276109)
Sequence:sense strand is shown

>T6075
CCCGGACCAGAAGCCAGGAGCCTCGCCCCGCAGCTGCACAGAGAGCAAGGGTATCGGCACTAACTTGTTT
GCAGAGACCCCATCACCTTCGGGAGCTCAGGTGCGCACCTTGCAAACTCCACTTTCTGCATCTGCCACTG
AGCCCGCGGGAGCCTCGGAAAGAGCCATGGCCAACGCGGGGCTGCAGCTGCTGGGTTTCATCCTGGCTTC
TCTGGGATGGATCGGCTCCATCGTCAGCACTGCCCTGCCCCAGTGGAAGATTTACTCCTATGCTGGGGAC
AACATCGTGACCGCTCAGGCCATCTACGAGGGACTGTGGATGTCCTGCGTTTCGCAAAGCACCGGGCAGA
TACAGTGCAAAGTCTTCGATTCCTTGCTGAATCTGAACAGTACTTTGCAGGCAACCCGAGCCTTGATGGT
AATTGGCATCCTGCTGGGGCTGATCGCAATCTTTGTGTCCACCATTGGCATGAAGTGCATGAGGTGCCTG
GAAGATGATGAGGTGCAGAAGATGTGGATGGCTGTCATTGGGGGCATAATATTTTTAATTTCAGGTCTGG
CGACATTAGTGGCCACAGCATGGTATGGAAACAGAATTGTTCAAGAATTCTATGACCCCTTGACCCCCAT
CAATGCCAGGTATGAATTTGGCCAGGCCCTCTTTACTGGCTGGGCCGCTGCCTCCCTCTGCCTTCTGGGA
GGTGTCCTACTTTCCTGCTCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGC
CAACACCTTCTAGTGGGAAAGACTATGTGTGACAGAGGCAAAGGAAGAGATCTTCCTGGAGCAAATACAA
AATGGACATTGAACCTAGGATTGACATTAACGCCTTAGACTGTTGATGATGGTTATCGGAACTGTGGTAG
AACAGAAGGAAGCATATTTTTATACATCCCCATGGCTATGCAGGCCTTGGCTGTACCTTACCATCTTCCC
TGAGCACAGGAGGGAAGGCTTTTGCCTGTGAACTGCTGCTTCCCTCTGAGAAATCACACTCAAACGGGGA
TAAGGTGCTCCTTGCATGTGTATAGATATGTACAGATACATAGTTTCTATTAAAAATAGACAAGTTACAA
AAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3491319 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3491319 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004814 same experiment
 EMAGE:31617 same embryo
 EMAGE:31702 same embryo
 EMAGE:31692 same embryo
 EMAGE:29645 same embryo
 EMAGE:31700 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS