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EMAGE:31950

Fndc3a ( MGI:1196463)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
foot
moderate moderate
regionalmoderate expression: see section 03 04 19
submandibular gland primordium
weak weak
regionalweak expression: see section 06 07 14 15 16
interdigital region between hindlimb digits 2 and 3
moderate moderate
regionalmoderate expression: see section 19
inner ear
moderate moderate
regionalmoderate expression: see section 03 04 05 14 15 16
hand
moderate moderate
regionalmoderate expression: see section 03 04
interdigital region between hindlimb digits 4 and 5
moderate moderate
regionalmoderate expression: see section 19
interdigital region between hindlimb digits 3 and 4
moderate moderate
regionalmoderate expression: see section 19
interdigital region between hindlimb digits 1 and 2
moderate moderate
regionalmoderate expression: see section 19
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T36391
Entity Detected:Fndc3a, ( MGI:1196463)
Sequence:sense strand is shown

>T36391
GGTCCTGTACTACACCTCAGGCTGTGCCCCTTCTGTCCCCGCAAGTCCTGTGTTGACCAAGGCTGGAGTT
ACTTGGCTGTCCCTACAGTGGACTAAGCCCTCAGGAACACCATCAGATGAAGGGATTTCTTACATTTTAG
AGATGGAAGAGGAAACATCAGGCTATGGCTTTAAGCCGAAATATGATGGAGAAGATCTTGCTTACACAGT
GAAAAATCTGAGACGAAGTACAAAGTATAAATTTAAGGTCATTGCTTATAACTCAGAAGGTAAAAGCAAT
CCTAGCGAAGTGGTGGAATTCAGTACCTGCCCTGATAAACCAGGAGTACCTGTGAAGCCTTCAGTTAAAG
GGAAGATACACTCGCACGGCTTTAAAATTACTTGGGATCCACCAAAAGACAATGGAGGGGCACCCATCAA
TAAGTACGTGGTGGAGATGGCAGAAGGTTCTAATGGAAACAAATGGGATATGATCTACAGTGGCACTACC
AGGGAACATCTTTGTGACCGGCTGACTCCAGGCTGCTATTACCGCTTACGGGTTTACTGCATTAGTGACG
GAGGGCAGAGTGCGGTCTCTGAATCTTTACTAATACAGACTCCAGCTGTGCCTCCTGGCCCATGCCTCCC
TCCCAGGTTACAGGGTAGACCCAAAGCAAAAGAAATACAGTTACGATGGGGACCTCCTCAGGTTGATGGT
GGATCACCCATTTCCTGTTATGCAGTAGAAATGACTCCTGCAGATAAAGATGAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 75417. Forward Primer - name:075417_F_cDNA_Fndc3, sequence:GGTCCTGTACTACACCTCAGGC; Reverse Primer - name:075417_N_SP6_cDNA_Fndc3, sequence:CTCATCTTTATCTGCAGGAGTC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_010190 same experiment
 EMAGE:30692 same embryo
 EMAGE:30619 same embryo
 EMAGE:30694 same embryo
 EMAGE:31970 same embryo
 EMAGE:30660 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS