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EMAGE:32095

Nkx3-1 NK-3 transcription factor, locus 1 (Drosophila) ( MGI:97352)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
lower jaw incisor
strong strong
regionalstrong expression: see section 11 15 16 19 20
upper jaw incisor
strong strong
regionalstrong expression: see section 12 13 14 16 17 20
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35503
Entity Detected:Nkx3-1, NK-3 transcription factor, locus 1 (Drosophila) ( MGI:97352)
Sequence:sense strand is shown

>T35503
TACCCTTTTCACAGTGATGTGCCAGTCCAAGGATTTACAGGGCAGCCTGAGTGTGGCAGGGTACACACGC
GGAGGGGGTTAAGACAAGCTGTGTAAACAGTTTGCCTGCAGGGGTGGGCTGCAAAACAGACTTCCTCTCC
AAGACATGGGCCTATGGGGTTTCCACACGCCAGGTGAGCGGCTTCCATCAGGACTTTATATTAGCAGGGA
AGAAAAGGACTCTCCTGCCCTTCCTGCTTAGACTCAGGAGGGCCTGCAGCTTCCCTGGCCTGAAAATTCA
CACTTTGTGATGACAGAGGTGCCATTAGTTTTAAACAAAGGACCTTCCAACCCTCCTTTTTATTTCTTGT
TCTTTCCTACAGGACCTCTCCGTTCATGCTTTTCATCTGTGCCTGTCTTATTTCGTGTAAGATTTGCTCC
CACCTCCTCCCAAGGTTTACCTTTCTTGGTTTAACAACTTAACTAGCTACAGACAGATTATGACATATCT
TTTAAAAGAAAAAAATGAGCAACTCATCTCTTCCCTTTAAAAATATGACATACTTTAGAGAGAGAAAAAA
AACCTAGCAACTCCTCTCTCTCTTTCCTTTAAAAATACTCAGCATTAAATCCCAAGCCCTATTTAAAGAC
ATGAGAGCTGAAGATGACAGGTTCTTTCGCAGGGCTGTGTGCTAGCTCTGTGTTACAGTTCAAAGGCTGA
TGCCCATTGGGGTCCTGGGGATCCCTGTAGGCAGAGGTGGTTTAGGGGTGCTTGTTTTTCATGTGTAAGG
AAGAACAGGACAAAAGGAAGGGCTG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 90276. Forward Primer - name:090276_F_cDNA_Nkx3-1, sequence:TACCCTTTTCACAGTGATGTGC; Reverse Primer - name:090276_N_SP6_cDNA_Nkx3-1, sequence:CAGCCCTTCCTTTTGTCCTG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_008961 same experiment
 EMAGE:30701 same embryo
 EMAGE:30708 same embryo
 EMAGE:30709 same embryo
 EMAGE:32145 same embryo
 EMAGE:30732 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS