EMAGE mouse gene expression spatial database

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EMAGE:32110

Eif4e3 ( MGI:1914142)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

neural retina

moderate

regional

moderate expression: see section 18 19 20 weak expression: see section 01 02 21

vomeronasal organ

moderate

regional

moderate expression: see section 10

nasal cavity olfactory epithelium

moderate

regional

moderate expression: see section 07 08 10 11 12 weak expression: see section 05 06 13 14

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3152
Entity Detected:	Eif4e3, ( MGI:1914142)
Sequence:	sense strand is shown >T3152 TGGCCTCGAGNCAGAATTCGGACGAGGAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGACTTTCT TAAAGCTTTCCAAATTCTCTGGGTTTTTTTGCACTCTTCCCCTCCCCATAAGATTCCTTATTCAGGGTAA TTATTGTTTTCTGCCCACCCTTTCATTGAGGCATAAGAGTTGGGTTTCCCCTTCAGTGACTCTACTGTAC CTTGTTAAGGAACATAGCCGCCACAGGACTGCCTGTGAAGCCACAGGGCACCAGGAGGAGGCCTAGCCTA GCAAAACCCTTTTTCTGATAAATTGTTGTGACACTTCCCTGCATATTGTGAGCTGGGCATTGTTTCTTTT GTGTGTGTGTTCCGTAGAAAGCACACTCAATTGATAGCACACACATCTTAAAACCCCTTTAAAAAGCAGT ATAAGGAAAATAAATTGTTGGTTTGCCTAAAATGAAAACTTTAATCACAATTGGGTGTCAGGCTCCAAAT CAAACTCTAGGTTTTGGGGGCCTACAGTGTAAGTATTTCTAACCAGAATTCCCCCTCCCC
Notes:	The probe template was PCR amplified from IMAGE:1547928 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template usi. T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1547928 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_007888 same experiment
	EMAGE:29915 same embryo
	EMAGE:29914 same embryo
	EMAGE:32170 same embryo
	EMAGE:29893 same embryo
	EMAGE:32168 same embryo
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source