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EMAGE:32137

Lass4 LAG1 homolog, ceramide synthase 4 ( MGI:1914510)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:32137 EMAGE:32137 EMAGE:32137 EMAGE:32137 EMAGE:32137
euxassay_002167_01 euxassay_002167_02 euxassay_002167_03 euxassay_002167_04 euxassay_002167_05
EMAGE:32137 EMAGE:32137 EMAGE:32137 EMAGE:32137 EMAGE:32137
euxassay_002167_06 euxassay_002167_07 euxassay_002167_08 euxassay_002167_09 euxassay_002167_10
EMAGE:32137 EMAGE:32137 EMAGE:32137 EMAGE:32137 EMAGE:32137
euxassay_002167_11 euxassay_002167_12 euxassay_002167_13 euxassay_002167_14 euxassay_002167_15
EMAGE:32137 EMAGE:32137 EMAGE:32137 EMAGE:32137
euxassay_002167_16 euxassay_002167_17 euxassay_002167_18 euxassay_002167_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
vestibulocochlear viii ganglion
weak weak
regionalweak expression: see section 05 15 16
cervico-thoracic ganglion
weak weak
regionalweak expression: see section 06 11
forebrain
moderate moderate
homogeneousmoderate expression: see section 12
spinal cord
moderate moderate
regionalmoderate expression: see section 09 10 11 12 weak expression: see section 07
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 15 weak expression: see section 05
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 04 05 06 08 09 10 11 12 13 14 weak expression: see section 01 02 03
facial vii ganglion
moderate moderate
regionalmoderate expression: see section 04 05 16 17 18 weak expression: see section 03
midbrain
moderate moderate
homogeneousmoderate expression: see section 08 09 10 11 12 13 14 15 16 weak expression: see section 05 06 07
diencephalon
moderate moderate
homogeneousmoderate expression: see section 08 09 10 11 13 14 15 weak expression: see section 06 07
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 04 05 06 07 14 15 16 17 18 19 weak expression: see section 02 03
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 12 weak expression: see section 08 13
cervical ganglion
weak weak
regionalweak expression: see section 06 10
telencephalon mantle layer
moderate moderate
regionalmoderate expression: see section 04 05 08 16 17 18 weak expression: see section 03 11 12 19
hindbrain
moderate moderate
homogeneousmoderate expression: see section 08 09 10 11 12 13 14 15 16 17 weak expression: see section 04 05 06 07
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6004
Entity Detected:Lass4, LAG1 homolog, ceramide synthase 4 ( MGI:1914510)
Sequence:sense strand is shown

>T6004
CTTGTCTAAGGCATCTTCGGATTAGCTGATCTCCGCACCGCCTCGGCCTGCATCTTGCTTTCTGAACCTC
CAGCATGTCGTTCAGCTTGAGTGAGTGGCTGTGGCAGGAGACATACTGGTTACCACCCAATGTCACATGG
GCAGAGCTGGAGGACCGTGATGGCCTGGTGTTCGCCCACCCTCACCACGTGCTTGCTGCCTTCCCAGTGG
CTCTGGTCCTGGTGGCTGTGCGAATTGTCTTTGAGAGATTTGTGGCCTTGCCCCTGAGCCGGTGGATGGG
TGTGCAGGATCCAATCAGGAGAAAGATAAAGCCCAACCCGGTGCTGGAGAAGTACTTCCTCAGGATGAAG
CAGTGTCCAGAGGAGACACAGATGGTCCTGCTGGCTTCCCAGTGTGGCCTCACGCTTCGGCAGACTCAAC
GCTGGTTCAGGAGACGTCGGAACCAGGATCGGCCTTCCTTATCCAAGAAATTCTGTGAAGCCTGCTGGAG
GTTTGTCTTCTATCTGTGTTCCTTCGTGGGTGGCACCTCCATCCTCTACCATGAATCATGGTTGTGGTCG
CCATCATTGTGCTGGGAGAATTACCCACATCAGACCCTGAATTTGTCCCTGTACTGGTGGTACCTCCTGG
AGCTGGGCTTCTACCTTTCACTGCTGATCACTTTGCCCTTTGATGTCAAACGCAAGGACTTCAAGGAGCA
GGTGGTGCACCATTTTGTGGCCGTGGGACTGATAGGCTTCTCCTACAGCGTCAACTTGCTCCGCATTGGC
GCTGTGGTACTGTTGTTGCATGACTGCTCCGACTACCTGCTGGAGGGTTGTAAGATTCTCAACTATGCCC
ACTTTAGGCGAGGGTGCGATGCTCTCTTCATCATGTTTGCCTTAGTCTTCTTCTACACGCGCCTCATATT
CTTCCCCACCCAGGTCATCTACACGTCTGTGTATGACTCCATCAAGAACTCGGGCCCCTTCTTTGGCTAC
TACTTCTTTATTGTGCTCTTGGTGATGCTACAGATTCTTCATGTGTACTGGTTCTGCCTCATCCTGCGCA
TGCTCTACAGTTTCCTGCATAAGGGTCAGATGACAGAGGACATTCGTAGCGATGTGGAAGAACCAGACTC
CAGTGATGACGAGCCAGTTTCTGAAGGTCCACAGCTGAAGAATGGGATGGCTCGAGGGTCTAGAGTAGCT
GTTACCAATGGCCCGCGGAGCCGGGCAGCAGCATGCCTGACCAATGGGCACACCCGGGCCACATAGACAA
CCTTGGACTGATGTTGAGGGGTTGCCGCCAGCATTGTGAATATTCAGATGCTGGGCTGGTGATTCTGGGA
GACAGGGAGGCCCTACCTCAAGGTAGGAAGAAGACTGATGATCTGTTTCCCTTCTGTTCCTCTCCCTTTA
TCCTTTTGAGCAGCTTGACAGAACCTGGGGGAGCAGTGGACTCTGCATCTGGCCTGAGCCAACCCCAGGC
TGTAGCTTGGGGGCTGTGGGGAGCTTTGGCTCCAAGGACCAATAAAACGTCAACAGCGATGAAAAAAAAA
AAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3487343 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3487343 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002167 same experiment
 EMAGE:29860 same embryo
 EMAGE:32091 same embryo
 EMAGE:29863 same embryo
 EMAGE:29887 same embryo
 EMAGE:32157 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS