EMAGE mouse gene expression spatial database

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EMAGE:32140

Acadvl acyl-Coenzyme A dehydrogenase, very long chain ( MGI:895149)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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euxassay_003010_11	euxassay_003010_12	euxassay_003010_13	euxassay_003010_14	euxassay_003010_15

euxassay_003010_16	euxassay_003010_17	euxassay_003010_18	euxassay_003010_19	euxassay_003010_20

euxassay_003010_21	euxassay_003010_22	euxassay_003010_23	euxassay_003010_24

View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

liver lobe

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4729
Entity Detected:	Acadvl, acyl-Coenzyme A dehydrogenase, very long chain ( MGI:895149)
Sequence:	sense strand is shown >T4729 CAGGGCCCAGACACACAACCTTTGGGCAGGCGAGACGCGAAGAGAAGAAGTCAGTGGTCAAGACTTCGGC GGCGGCTTTGGAGATGCAGTCGGCTCGGATGACCCCGAGTGTGGGGCGACAGCTGCTGCGGCTGGGGGCC CGAAGCTCGCGATCTACTACTGTGCTTCAGGGACAACCCCGGCCTATCTCTGCCCAGCGACTTTATGCCA GGGAGGCCACTCAGGCAGTTCTGGACAAGCCAGAAACCCTCTCCTCTGATGCTTCCACCAGAGAAAAACC AGCCAGGGCAGAATCGAAGTCCTTTGCTGTGGGGATGTTCAAAGGCCAGCTTACCATTGATCAGGTGTTC CCATACCCATCTGTGCTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGGT TCTTTGAGGAAGTGAATGACCCTGCCAAGAACGACGCCTTGGAGAAGGTGGAGGACGACACTTTGCAGGG ACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTGGGCCTCTCTAATACC CAGTATGCTCGCTTGGCAGAGATTGTGGGCATGCATGACCTTGGTGTTAGCGTTACCCTGGGAGCTCATC AGAGCATCGGTTTCAAAGGCATCTTGCTCTATGGCACAAAGGCCCAGAGAGAAAAATACCTTCCCAGAGT GGCATCTGGGCAGGCTTTGGCTGCTTTCTGCCTAACAGAGCCCTCGAGTGGATCCGATGTAGCCTCCATC CGAAGCTCAGCCATACCCAGCCCCTGTGGAAAATATTACACTCTCAATGGGAGCAAGATCTGGATCAGTA ATGGGGGCCTGGCCGACATTTTCACTGTCTTTGCCAAGACGCCAATTAAAGATGCAGCCACGGGGGCCGT GAAAGAGAAGATCACAGCTTTTGTAGTGGAAAGGAGCTTCGGAGGGGTTACCCATGGGCTCCCTGAAAAG AAGATGGGCATCAAAGCATCTAACACGTCAGAGGTGTACTTTGATGGAGTGAAGGTGCCATCAGAGAATG TGCTAGGAGAGGTGGGAGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTTGGGATGGC TGCAACCCTCGCAGGCACCATGAAATCCCTCATTGCCAAGGCGGTTGATCATGCTACTAATCGTACCCAG TTTGGGGACAAAATTCACAACTTTGGGGTGATCCAGGAAAAGCTGGCTCGGATGGCTATTCTGCAGTATG TGACTGAGTCCATGGCTTACATGCTGAGTGCCAACATGGACCAGGGATTCAAAGACTTCCAGATAGAAGC CGCCATCAGCAAAATCTTTTGCTCGGAGGCGGCCTGGAAAGTGGCAGATGAGTGCATCCAAATAATGGGG GGCATGGGCTTCATGAAGGAACCAGGGGTGGAGCGTGTGCTCCGAGATATTCGAATCTTCCGGATCTTTG AAGGGGCAAATGACATTCTTCGACTGTTTGTGGCTCTCCAAGGCTGTATGGACAAAGGAAAGGAACTCAC TGGGCTGGGCAATGCCCTGAAGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAG CTGAGACGGAGGACAGGAATCGGCAGTGGTTTGAGTCTGTCAGGGATTGTCCACCCAGAGTTAAGTCGCA GTGGTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAA GAAAGGGATTGTCAACGAGCAGTTCCTGCTGCAGCGACTGGCGGACGGCGCCATTGACCTCTATGCCATG GTGGTGGTTCTGTCCAGAGCCTCAAGGTCCCTGAGTGAGGGCTACCCGACGGCACAGCATGAGAAAATGC TCTGTGATAGCTGGTGCATTGAGGCTGCAACTCGGATCCGAGAAAACATGGCCAGTCTGCAGTCCAGCCC TCAGCATCAGGAGCTCTTCCGGAACTTCAGAAGCATCTCCAAGGCCATGGTGGAGAATGGTGGCCTGGTC ACCGGTAACCCCCTGGGAATCTGAGACTCCCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCC AAAACCCTTTATGGAGGTGATGGAGTACTTATTGCCTTAACAATAAATTTTCTACCAAAAAAAAAAAAAA A
Notes:	The probe template was PCR amplified from IMAGE:5037878 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5037878 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_003010 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source