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EMAGE:3342

Hhex hematopoietically expressed homeobox ( MGI:96086)
TS09 (6.5 dpc)
in situ hybridisation

Data Images
EMAGE:3342
Figure 6B of Perea-Gomez et al., 1999 [PMID:10498685] .Copyright: This image is from Perea-Gomez et al., Development 126: 4499-4511 (1999), and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:3342Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3342_wholemount_strong_3D_1.wlz
3342_wholemount_possible_3D_1.wlz
3342_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3342_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
primitive endoderm
detected detected
regionalExpression is restricted to the anterior visceral endoderm.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1196513
Entity Detected:Hhex, hematopoietically expressed homeobox ( MGI:96086)
Sequence:sense strand is shown

>MGI:1196513
CGGAGGCCCTCTGTACCCGTTCCCGCGGACGGTGAACGACTACACGCACGCCCTACTCCGCCACGACCCC
CTGGGCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGA
GGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCCCCACCCGA
GAGAAAGCGTCTGGCCAAGATGTTGCAGCTCAGTGAGAGACAGGTCAAAACCTGGTTTCAGAATCGCCGA
GCTAAATGGAGAAGACTGAAACAGGAGAATCCTCAAAGCAACAAAAAGGATGCGTTGGACAGTTTGGACA
CTTCCTGTGAGCAGGGTCAAGACTTGCCCAGTGAACAGAATAAAGGTGCCTCTTTGGATCGTTCGCAGTG
TTCACCCTCCCCAGCCTCTCAGGAAGACCCCGACTCGGAGATCTCAGAGGATTCCGACCAGGAGGTGGAC
ATCGAGGGGGATAAAGGCTACTTTAATGCTGGATGACA
nt 291 - nt 818 of Z21524.1
Notes:The Hhex probe used in this study by Perea-Gomez et al., 1999 [PMID:10498685] was originally described in Thomas et al., 1998 [PMID:9389666] who describe the probe as spanning "positions 291-818 of the Hex cDNA sequence (EMBL accession no. Z21524)."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:6.5 dpc
Theiler Stage:TS09
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Perea-Gomez A; Shawlot W; Sasaki H; Behringer RR; Ang S, 1999 [PMID:10498685] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:10498685] Perea-Gomez A, Shawlot W, Sasaki H, Behringer RR, Ang S 1999 HNF3beta and Lim1 interact in the visceral endoderm to regulate primitive streak formation and anterior-posterior polarity in the mouse embryo. Development (1999):4499-511
 [ PMID:9389666] Thomas PQ, Brown A, Beddington RS 1998 Hex: a homeobox gene revealing peri-implantation asymmetry in the mouse embryo and an early transient marker of endothelial cell precursors. Development (125):85-94
Links:MGI:1346303 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI