EMAGE mouse gene expression spatial database

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EMAGE:352

Foxo1 forkhead box O1 ( MGI:1890077)
TS19 (11.5 dpc)
in situ hybridisation

Data Images


Figure 5E of Yoshida et al., 1997 [PMID:9006071] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity:
Find spatially similar expression patterns:

Notes:

Transverse section. Dorsal-medial region indicated by arrowsheads. Arrows indicate limits of expression. Abbreviations used: di, diencephalon; lv, lateral ventricle; IIIv, third ventricle.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

3D mapping

3D context movie

View mapped 3D expression image

Download individual expression domains:

352_voxel_strong_3D_1.wlz

352_voxel_notDetected_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:352_all_domains.zip

Find spatially similar expression patterns:

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

telencephalon

detected

regional

Expression in almost the entire region of the telencephalon, except the dorsal-medial regions adjacent to the roof and diencephalon.

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:1340507
Entity Detected:	Foxo1, forkhead box O1 ( MGI:1890077)
Sequence:	sense strand is shown >MGI:1340507 CTAGCCTTTAAGCGCGGGGCACGGCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCTCCCTCT ACTGGCCCATGTCGCCCTTCCTGTCCCTGCACCACCCTCGCGCCAGCAGCACTTTGAGTTACAACGGGAC CACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAAC CACTCCTTCTCCACCGCCAACGGGCTGAGCGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGC ACCACCTCACGGCCGCTGCGCTCGCCGCCTCCGTGCCCTGCGGCCTGTCGGTGCCCTGCTCCGGGACCTA CTCCCTCAACCCCTGCTCCGTCAACCTGCTCGCGGGCCAGACCAGTTACTTTTTCCCCCACGTCCCGCAC CCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCCTCCTCTACGTCGCCGCAGG CCCCCTCGACCCTGCCCTGTGAGTCTTTAAGACCCTCTTTGCCAAGTTTTACGACAGGACTGTCCGGGGG ACTGTCTGATTATTTCACACATCAAAATCAGGGGTCTTCTTCCAACCCTTTAATACATTAACATCCCGGG GACCAGACTGTAAGTGAACGTTTTACACACATTTGCATTGTAAATGATAATTAAAAAATAAGTCCAGGTA TTTTTTATTAAGCCCTTCCCCCCATTTCTGTACGTTTGTTCAGTCTTTAGGGTTGTTTACTATTCTAACA CGGTGTGGAGTGTCAGCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGTCAA ATTATAGTAGAATGTGTATCTAAATAGTGACTGCTTTGCCATTTCATTCAAACCTGACAAGTCTATCTCT AAAGGCTGCCAGATTTCCATGTGTGCAGTATTATAAGTTATCATGGATCTATCTGGTGGACGCAGGCCTT GAAGAACAACCTAAATTATGAAGAGAGTTTTAAAATGTTAAACTGTAATTTGTATTTAAGAATTTGTAGT AAAGGTGCCCAAGAAATTATATTGGCCATTTATTGTTTTGTCCTTTTCTTTAAAGAACTGTTTTTTTCCT TTTGTTTACTTTTAGACCAAAGATTGGATTCTAGCAAATGCACTTGGTATACTAAGTATTAAAACAAGCA AACAAACAAACAAAAAAAGGAAGGTTGTTTAGTTTGGCAACACTGCCCATTCAATTGAATCCGAAAGGAC AAAATTAAGGATTGCCTTCAGTTTGTGTTGTGTATATTTCGATGTATGTGGTCACTAACAGGTCACTTTT ATTTTTTCTAAATGTAGTGAAATGTTAATACCTATTGTACTTATAGGTAAACCTTGCAAATATGTAACCT GTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTTAAAAATTCTTGATTGTGATACT GTGGTCATATGCCCTTGTTTGTCACTTACAAAAATGTTTACTATGAACACACAGAAATAAAAAATAGGCT AAATTCATATAT
	nt 1265 - nt 2816 of M87634.1
Notes:	The Foxg1 (BF-1) probe used in this study by Yoshida et al., 1997 [PMID:9006071] is indicated as being originally described by Tao & Lai, 1992 [PMID:1350202] as corresponding to a region "containing the BF-1 [Foxg1] cDNA from the NheI site at nt 1265 to the 3' end. This probe does not contain the sequence encoding the DNA-binding domain." This is a rat clone.
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	11.5 dpc
Theiler Stage:	TS19
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:

4% paraformaldehyde

General Information

Authors:	Yoshida et al., 1997 [PMID:9006071] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ PMID:9006071] Yoshida M, Suda Y, Matsuo I, Miyamoto N, Takeda N, Kuratani S, Aizawa S 1997 Emx1 and Emx2 functions in development of dorsal telencephalon. Development (124):101-11
	[ doi:10.1016/0896-6273(92)90210-5] [ PMID:1350202] Tao W, Lai E 1992 Telencephalon-restricted expression of BF-1, a new member of the HNF-3/fork head gene family, in the developing rat brain. Neuron (8):957-66
Links:	MGI:2136375 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source