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EMAGE:3525

Nkx2-6 NK2 transcription factor related, locus 6 (Drosophila) ( MGI:97351)
TS17 (10 dpc)
in situ hybridisation

Data Images
EMAGE:3525
Fig1E.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(97)00174-3] Mech Dev 69: 215-8, Nikolova M; Chen X; Lufkin T, Nkx2.6 expression is transiently and specifically restricted to the branchial region of pharyngeal-stage mouse embryos Copyright 1997.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: Arrow indicates the caudal branchial arches. Abbreviation: h, heart.
Expression Pattern Description
Spatial Annotation:
EMAGE:3525Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3525_wholemount_strong_3D_1.wlz
3525_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3525_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
2nd branchial arch
detected detected
3rd branchial arch
detected detected
4th branchial arch
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1196880
Entity Detected:Nkx2-6, NK2 transcription factor related, locus 6 (Drosophila) ( MGI:97351)
Sequence:sense strand is shown

>MGI:1196880
GTCGGTGCACCTGGGAGACAGTCCTGGAGATGGGCTCGAATCCTGTGGGGGAGCCACGTAAAAACTCCTC
CGGGCACGATCTCCCGACTTGGAGCCAGGAACCCAATGACCGATCGCGGCGTGGGCAACCTGAGTGGCGA
CATGCGCCGAGGCGGTCCGGTTTCAACCAGAACGCGGCCACAGCGGAAGTCCCGCGTGCTATTCTCCCAG
GCCCAAGTGCTGGCCCTGGAGCGGCGCTTCAAGCAGCAGCGATACCTGACTGCGCCCGAGCGTGAGCACT
TGGCCAGCGCGCTGCAGCTCACGTCCACGCAGGTCAAGATCTGGTTCCAAAACCGGCGCTACAAGTCCAA
GAGTCAGCGCCAGGACCAGAATCTGGAACTGGCCGGCCACCCGTTAGCACCGCGCCCGGGTAGCAGTGCC
AGTACTGGTACTGGACGGCAACCCCTGCCTGGATCCGACGTAGCCGCATTCCTGGTCCCTACAAAGCCAC
CTCGCCCTATTCCTGCTTCGGTGGCTACGCGGGCACTCCCTACGACGCTAGCTATGCGAGCCGCTGCACC
AGCGCCAGCGCCGGCCCCGGGCCGCTCACACCACTGGCCAGCTCTGGCTTCAGCCCAGGTGGCCAAAGTG
CGGCTCCGCAGGGCCATCTGCCCGCTACGCCTCAGGGAGTCACGGCCTGGTGAAAAGCCTGAGCTCACCT
ACTGCCATTCGGTGCCTGATGCCTGGTCCCCTCCCCTTCCTGCTGGTGGGCGCGGGGCTGGAAAGCACTG
CCCACCTTACTGATCTCGGAACTGAACTGCTTGGAGGAGCGGCCCTGAAGACTTGAGAACATTCTTTCCC
TCGGAAGTGTAACCACGTAGCCACGTAGATGCTGTGCAGAAAGACTAGCACAAGAAATTAATAATCTATC
CCTGCCTCTGCTAGAAAGTAAAAAAAAAAAAAAA
nt 1 - nt 944 of AF030113.1
Notes:The Nkx2-6 probe used in this study by Nikolova et al., 1997 [PMID:9486544] was transcribed from the insert of the EST clone AA108980. The authors sequenced the insert of this clone in its entireity and deposited this sequence to GenBank as AF030113.1.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6J
Age:10 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + Purple Precipitating Reagent
General Information
Authors:Nikolova M; Chen X; Lufkin T, 1997 [PMID:9486544] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(97)00174-3] [ PMID:9486544] Nikolova M, Chen X, Lufkin T 1997 Nkx2.6 expression is transiently and specifically restricted to the branchial region of pharyngeal-stage mouse embryos. Mech Dev (69):215-8
Links:MGI:2429957 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI