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EMAGE:3536

Pax9 paired box gene 9 ( MGI:97493)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:3536 EMAGE:3536
Fig5A.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(02)00345-3] Mech Dev 119: 127-35, Ohnemus S; Kanzler B; Jerome-Majewska LA; Papaioannou VE; Boehm T; Mallo M, Aortic arch and pharyngeal phenotype in the absence of BMP-dependent neural crest in the mouse. Copyright 2002. Fig5C.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(02)00345-3] Mech Dev 119: 127-35, Ohnemus S; Kanzler B; Jerome-Majewska LA; Papaioannou VE; Boehm T; Mallo M, Aortic arch and pharyngeal phenotype in the absence of BMP-dependent neural crest in the mouse. Copyright 2002.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Note: C, Vibratome section through the plane indicated in (A). Arrow indicates third pharyngeal pouch. I-IV, branchial arches I-IV, respectively.
Expression Pattern Description
Spatial Annotation:
EMAGE:3536EMAGE:3536EMAGE:3536Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mappingspatial mappingwholemount mapping

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
3536_wholemount_strong_3D_2.wlz
3536_wholemount_possible_3D_2.wlz
3536_wholemount_notDetected_3D_2.wlz
3536_voxel_strong_3D_1.wlz
3536_voxel_possible_3D_1.wlz
3536_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3536_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
3rd branchial pouch
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3046972
Entity Detected:Pax9, paired box gene 9 ( MGI:97493)
Notes:The Pax9 probe used in this study by Ohnemus et al., 2002 [PMID:12464426] is indicated as that originally used in Neidhardt et al., 2000 [PMID:11044609] , which is of undefined identity.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:sectioned wholemount
Procedures
Embedding:gelatin/sucrose
General Information
Authors:Ohnemus S; Kanzler B; Jerome-Majewska LA; Papaioannou VE; Boehm T; Mallo M, 2002 [PMID:12464426] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(02)00345-3] [ PMID:12464426] Ohnemus S, Kanzler B, Jerome-Majewska LA, Papaioannou VE, Boehm T, Mallo M 2002 Aortic arch and pharyngeal phenotype in the absence of BMP-dependent neural crest in the mouse. Mech Dev (119):127-35
 [ doi:10.1016/S0925-4773(00)00453-6] [ PMID:11044609] Neidhardt L, Gasca S, Wertz K, Obermayr F, Worpenberg S, Lehrach H, Herrmann BG 2000 Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Mech Dev (98):77-94
Links:MGI:3046973 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI