Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:3537

Pax9 paired box gene 9 ( MGI:97493)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:3537
Fig6E.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(02)00345-3] Mech Dev 119: 127-35, Ohnemus S; Kanzler B; Jerome-Majewska LA; Papaioannou VE; Boehm T; Mallo M, Aortic arch and pharyngeal phenotype in the absence of BMP-dependent neural crest in the mouse. Copyright 2002.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: The arrow indicates the third pharyngeal pouch.
Expression Pattern Description
Spatial Annotation:
EMAGE:3537Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3537_wholemount_strong_3D_1.wlz
3537_wholemount_possible_3D_1.wlz
3537_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3537_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
3rd branchial pouch endoderm
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3046972
Entity Detected:Pax9, paired box gene 9 ( MGI:97493)
Notes:The Pax9 probe used in this study by Ohnemus et al., 2002 [PMID:12464426] is indicated as that originally used in Neidhardt et al., 2000 [PMID:11044609] , which is of undefined identity.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Ohnemus S; Kanzler B; Jerome-Majewska LA; Papaioannou VE; Boehm T; Mallo M, 2002 [PMID:12464426] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(02)00345-3] [ PMID:12464426] Ohnemus S, Kanzler B, Jerome-Majewska LA, Papaioannou VE, Boehm T, Mallo M 2002 Aortic arch and pharyngeal phenotype in the absence of BMP-dependent neural crest in the mouse. Mech Dev (119):127-35
 [ doi:10.1016/S0925-4773(00)00453-6] [ PMID:11044609] Neidhardt L, Gasca S, Wertz K, Obermayr F, Worpenberg S, Lehrach H, Herrmann BG 2000 Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Mech Dev (98):77-94
Links:MGI:3046973 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI