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EMAGE:3599

Efna1 ephrin A1 ( MGI:103236)
TS11 (mid-HF Downs & Davies)
in situ hybridisation

Data Images
EMAGE:3599 EMAGE:3599
Fig1A.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(98)00142-7] Mech Dev 77: 201-4, McBride JL; Ruiz JC, Ephrin-A1 is expressed at sites of vascular development in the mouse. Copyright 1998 Fig1C.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(98)00142-7] Mech Dev 77: 201-4, McBride JL; Ruiz JC, Ephrin-A1 is expressed at sites of vascular development in the mouse. Copyright 1998

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: ps - primitive streak; arrowhead - plane of section of Fig1C; en - anterior pharyngeal endoderm.
Expression Pattern Description
Spatial Annotation:
EMAGE:3599Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3599_wholemount_strong_3D_1.wlz
3599_wholemount_possible_3D_1.wlz
3599_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3599_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
embryo mesoderm
detected detected
regionalExpression is in mesoderm emerging from the primitive streak and allantoic bud
definitive endoderm
detected detected
regionalExpression is in a crescent underlying the site of the prospective heart.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2445336
Entity Detected:Efna1, ephrin A1 ( MGI:103236)
Notes:The template clone used to make the Efna1 probe used in this study by McBride & Ruiz, 1998 [PMID:9831653] is described as a "A 1.3 kb mouse B61 cDNA clone" that was obtained from Dr. R. Lindberg (AMGEN, Inc.). Editors Note: the actual start and end points of the probe sequence are not reported.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:mid-HF Downs & Davies
Theiler Stage:TS11
Mutations:none (wild-type)
Preparation:sectioned wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:McBride JL; Ruiz JC (1998) [PMID:9831653] . Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(98)00142-7] [ PMID:9831653] McBride JL, Ruiz JC 1998 Ephrin-A1 is expressed at sites of vascular development in the mouse. Mech Dev (77):201-4
Links:MGI:2446521 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI