EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:3606

Alx1 ALX homeobox 1 ( MGI:104621)
TS17 (10.5 dpc)
in situ hybridisation

Data Images


Fig1J.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(01)00450-6] Mech Dev 107: 163-7, Beverdam A; Meijlink F, Expression patterns of group-I aristaless-related genes during craniofacial and limb development. Copyright 2001	Fig1-E10.5.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(01)00450-6] Mech Dev 107: 163-7, Beverdam A; Meijlink F, Expression patterns of group-I aristaless-related genes during craniofacial and limb development. Copyright 2001	Fig1K.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(01)00450-6] Mech Dev 107: 163-7, Beverdam A; Meijlink F, Expression patterns of group-I aristaless-related genes during craniofacial and limb development. Copyright 2001

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Arrow in J points to expression of Cart1 in the maxillary process. In the cartoon: LNP, lateral nasal process; Mn, mandibular arch; Mx, maxillary process; O, otocyst; 2nd, 2nd branchial arch. K is a frontal view of a similar stage embryo.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

3606_wholemount_strong_3D_1.wlz

3606_wholemount_possible_3D_1.wlz

3606_wholemount_notDetected_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:3606_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

latero-nasal process mesenchyme

detected

medial-nasal process mesenchyme

detected

1st branchial arch

detected

regional

Expression is in the distal mandibular arch

1st branchial arch maxillary component

detected

regional

Expression is in the distal tips of the maxillary process

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:889863
Entity Detected:	Alx1, ALX homeobox 1 ( MGI:104621)
Sequence:	sense strand is shown >MGI:889863 CTATCCTTGGGGACAAATGTGACAGCAATGTATCCAGCAGCAAAAAGAGGAGACACCGAACTACCTTTAC CAGTTTGCAGCTGGAGGAACTGGAGAAAGTTTTCCAGAAAACCCATTACCCAGATGTATATGTCAGAGAA CAACTTGCCCTGAGAACGGAGCTCACTGAGGCCAGGGTCCAGGTTTGGTTTCAAAATCGAAGGGCCAAGT GGAGAAAAAGAGAACGATACGGCCAAATACAGCAAGCTAAAAGCCATTTCGCTGCCACGTACGACATATC AGCCTTACCAAGGACGGACAGCTACCCACAGATCCAGAACAATTTGTGGGCAGGAAATGCTAGCGGTGGT TCTGTGGTTACGTCATGCATGCTACCACGTGACGCGTCCTCCTGCATGACACCTTACTCTCACTCGCCTC GGACAGATTCCAGTTATACGGGGTTTTCGAACCACCAGAATCAGTTCAGCCACGTGCCCCTCAATAATTT TTTCACTGACTCTCTTCTCACTGGAGCTACCAACGGACACGCATTTGAAACAAAGCCGGAGTTTGAAAGG AGGTCT
Notes:	The Cart1 probe used in this study by Beverdam & Meijlink, 2001 [PMID:11520673] is indicated as that used by tenBerge et al, 1998 [PMID:9676189] . tenBerge et al describe the template clone as thus: "Based on its sequence present in the EMBL/Genbank database, an EST clone (Accession No. AA388194) represents a mouse Cart1 cDNA. We purchased this cDNA, cloned in the vector pSport1, from Genome Systems (St. Louis, MO; clone ID 790077) and reconfirmed by sequencing its extreme high similarity at the level of the inferred translation product (65 identical amino acids in a stretch of 66, in comparison to human Cart1". Editor's note: the only publicly available insert sequence of this clone is the short EST read AA388194.1.
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	10.5 dpc
Theiler Stage:	TS17
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Beverdam A; Meijlink F (2001) [PMID:11520673] . Indexed by GXD, Spatially mapped by EMAGE
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/S0925-4773(01)00450-6] [ PMID:11520673] Beverdam A, Meijlink F 2001 Expression patterns of group-I aristaless-related genes during craniofacial and limb development. Mech Dev (107):163-7
	[ doi:10.1006/dbio.1998.8921] [ PMID:9676189] ten Berge D, Brouwer A, el Bahi S, Guénet JL, Robert B, Meijlink F 1998 Mouse Alx3: an aristaless-like homeobox gene expressed during embryogenesis in ectomesenchyme and lateral plate mesoderm. Dev Biol (199):11-25
Links:	MGI:3039372 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source