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EMAGE:3643

Foxg1 forkhead box G1 ( MGI:1347464)
TS12 (8.5 dpc)
in situ hybridisation

Data Images
EMAGE:3643
Fig5E.Copyright: This image is from Acampora D, Development 2001;128():4801-4813, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:3643Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3643_wholemount_strong_3D_1.wlz
3643_wholemount_moderate_3D_1.wlz
3643_wholemount_weak_3D_1.wlz
3643_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3643_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
embryo
detected detected
regionalThe details of these results are not described in the text.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2149762
Entity Detected:Foxg1, forkhead box G1 ( MGI:1347464)
Sequence:sense strand is shown

>MGI:2149762
GCCAAGCTGGCCTTTAAGCGCGGGGCGCGCCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCT
CCCTCTACTGGCCCATGTCGCCCTTCCTGTCCCTGCACCACCCCCGCGCCAGCAGCACTTTGAGTTACAA
CGGGACCACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGC
AACAACCACTCCTTCTCCACCGCCAACGGGCTGAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGTACG
CCACGCACCACCTCACGGCCGCTGCGCTCGCCGCCTCGGTGCCCTGCGGCCTGTCGGTGCCCTGCTCCGG
GACCTACTCCCTCAACCCCTGCTCCGTCAACCTGCTCGCGGGCCAGACCAGTTACTTTTTCCCCCACGTC
CCGCACCCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCCTCCTCTACGTCGC
CGCAGGCCCCCTCGACCCTGCCCTGTGAGTCTTTAAGACCCTCTTTGCCAAGTTTTACGACAGGACTGTC
CGGGGGACTGTCTGATTATTTCACACATCAAAATCAGGGGTCTTCTTCCAACCCTTTAATACATTAACAT
CCGGGGGACCAGACTGTAAGTGAACGTTTTACACACATTTGCATTGTAAATGATAATTAAAAAAATAAGT
CCAGGGATTTTTTATTAAGCCCCCCCTCCCCATTTCTGTACGTTTGTTCAGTCTTTAGGGTCGTTTACTA
TTCTAACACGGTGTGGAGTGTCAGCGAGGTGCAATGTGGGAGAATACATTGTA
nt 1385 - nt 2207 of NM_008241.1
Notes:The Foxg1 (BF-1) probe used in this study by Acampora et al., 2001 [PMID:11731460] is indicated as that originally described by Acampora et al., 1998 [PMID:9811592] i.e. a "PCR fragment including the region between aa 273 and aa 481 plus 198 bp downstream the TGA". Editors note: The probe start/end co-ordinates with respect to the Foxg1 cDNA RefSeq NM_008241.1 was determined from this information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:(C57BL/6 x DBA/2)F1
Age:8.5 dpc
Theiler Stage:TS12
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Acampora D; Boyl PP; Signore M; Martinez-Barbera JP; Ilengo C; Puelles E; Annino A; Reichert H; Corte G; Simeone A (2001) [PMID:11731460] , Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11731460] Acampora D, Boyl PP, Signore M, Martinez-Barbera JP, Ilengo C, Puelles E, Annino A, Reichert H, Corte G, Simeone A 2001 OTD/OTX2 functional equivalence depends on 5' and 3' UTR-mediated control of Otx2 mRNA for nucleo-cytoplasmic export and epiblast-restricted translation. Development (128):4801-13
 [ PMID:9811592] Acampora D, Avantaggiato V, Tuorto F, Briata P, Corte G, Simeone A 1998 Visceral endoderm-restricted translation of Otx1 mediates recovery of Otx2 requirements for specification of anterior neural plate and normal gastrulation. Development (125):5091-104
Links:MGI:2155382 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI