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EMAGE:3645

Foxg1 forkhead box G1 ( MGI:1347464)
TS12 (8.75 dpc)
in situ hybridisation

Data Images
EMAGE:3645
Figure 4G. Copyright: This image is from Filosa et al., Development 124: 2843-2854 (1997), and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:3645Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3645_wholemount_strong_3D_1.wlz
3645_wholemount_possible_3D_1.wlz
3645_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3645_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
future prosencephalon
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1338394
Entity Detected:Foxg1, forkhead box G1 ( MGI:1347464)
Sequence:sense strand is shown

>MGI:1338394
CTAGCCTTTAAGCGCGGGGCACGGCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCTCCCTCT
ACTGGCCCATGTCGCCCTTCCTGTCCCTGCACCACCCTCGCGCCAGCAGCACTTTGAGTTACAACGGGAC
CACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAAC
CACTCCTTCTCCACCGCCAACGGGCTGAGCGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGC
ACCACCTCACGGCCGCTGCGCTCGCCGCCTCCGTGCCCTGCGGCCTGTCGGTGCCCTGCTCCGGGACCTA
CTCCCTCAACCCCTGCTCCGTCAACCTGCTCGCGGGCCAGACCAGTTACTTTTTCCCCCACGTCCCGCAC
CCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCCTCCTCTACGTCGCCGCAGG
CCCCCTCGACCCTGCCCTGTGAGTCTTTAAGACCCTCTTTGCCAAGTTTTACGACAGGACTGTCCGGGGG
ACTGTCTGATTATTTCACACATCAAAATCAGGGGTCTTCTTCCAACCCTTTAATACATTAACATCCCGGG
GACCAGACTGTAAGTGAACGTTTTACACACATTTGCATTGTAAATGATAATTAAAAAATAAGTCCAGGTA
TTTTTTATTAAGCCCTTCCCCCCATTTCTGTACGTTTGTTCAGTCTTTAGGGTTGTTTACTATTCTAACA
CGGTGTGGAGTGTCAGCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGTCAA
ATTATAGTAGAATGTGTATCTAAATAGTGACTGCTTTGCCATTTCATTCAAACCTGACAAGTCTATCTCT
AAAGGCTGCCAGATTTCCATGTGTGCAGTATTATAAGTTATCATGGATCTATCTGGTGGACGCAGGCCTT
GAAGAACAACCTAAATTATGAAGAGAGTTTTAAAATGTTAAACTGTAATTTGTATTTAAGAATTTGTAGT
AAAGGTGCCCAAGAAATTATATTGGCCATTTATTGTTTTGTCCTTTTCTTTAAAGAACTGTTTTTTTCCT
TTTGTTTACTTTTAGACCAAAGATTGGATTCTAGCAAATGCACTTGGTATACTAAGTATTAAAACAAGCA
AACAAACAAACAAAAAAAGGAAGGTTGTTTAGTTTGGCAACACTGCCCATTCAATTGAATCCGAAAGGAC
AAAATTAAGGATTGCCTTCAGTTTGTGTTGTGTATATTTCGATGTATGTGGTCACTAACAGGTCACTTTT
ATTTTTTCTAAATGTAGTGAAATGTTAATACCTATTGTACTTATAGGTAAACCTTGCAAATATGTAACCT
GTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTTAAAAATTCTTGATTGTGATACT
GTGGTCATATGCCCTTGTTTGTCACTTACAAAAATGTTTACTATGAACACACAGAAATAAAAAATAGGCT
AAATTCATATAT
nt 1265 - nt 2816 of M87634.1
Notes:The Foxg1 (BF-1) probe used in this study by Filosa et al., 1997 [PMID:9226455] is indicated as that described by Tao & Lai, 1992 [PMID:1350202] i.e. a rat sequence "containing the BF-1 cDNA from the NheI site at nt 1265 to the 3' end" (see Figure 1 therein and the corresponding Genbank sequence M87634.1). Note that the template clone also contains a poly(A) tail not included in the GenBank sequence.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:involves: 129/Sv * C57BL/6 * CD-1
Age:8.75 dpc
Theiler Stage:TS12
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Filosa S; Rivera-Perez JA; Gomez AP; Gansmuller A; Sasaki H; Behringer RR; Ang SL, 1997 [PMID:9226455] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:9226455] Filosa S, Rivera-Perez JA, Gomez AP, Gansmuller A, Sasaki H, Behringer RR, Ang SL 1997 Goosecoid and HNF-3beta genetically interact to regulate neural tube patterning during mouse embryogenesis. Development (124):2843-54
 [ doi:10.1016/0896-6273(92)90210-5] [ PMID:1350202] Tao W, Lai E 1992 Telencephalon-restricted expression of BF-1, a new member of the HNF-3/fork head gene family, in the developing rat brain. Neuron (8):957-66
Links:MGI:1338508 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI