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EMAGE:3654

Foxf1a forkhead box F1a ( MGI:1347470)
TS12 (6-8 Somite no.)
in situ hybridisation

Data Images
EMAGE:3654 EMAGE:3654 EMAGE:3654 EMAGE:3654 EMAGE:3654
Fig1C (top)Copyright: This image is from Mahlapuu M, Development 2001;128():155-166, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright. Fig1A Copyright: This image is from Mahlapuu M, Development 2001;128():155-166, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright. Fig1B Copyright: This image is from Mahlapuu M, Development 2001;128():155-166, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright. Fig1C (bottom)Copyright: This image is from Mahlapuu M, Development 2001;128():155-166, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright. Fig1C (middle)Copyright: This image is from Mahlapuu M, Development 2001;128():155-166, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Image annotations: co, coelom; so, somatic mesoderm; sp, splanchnic mesoderml al, allantois; ys, yolk sac.
Expression Pattern Description
Spatial Annotation:
EMAGE:3654EMAGE:3654EMAGE:3654EMAGE:3654Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D mapping3D mappingspatial mapping

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
3654_voxel_moderate_3D_1.wlz
3654_voxel_notDetected_3D_1.wlz
3654_voxel_possible_3D_1.wlz
3654_voxel_strong_3D_1.wlz
3654_voxel_possible_3D_2.wlz
3654_voxel_notDetected_3D_2.wlz
3654_voxel_strong_3D_2.wlz
3654_voxel_possible_3D_3.wlz
3654_voxel_notDetected_3D_3.wlz
3654_voxel_strong_3D_3.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3654_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
somatopleure
detected detected
See Fig1C
splanchnopleure
detected detected
See Fig1C
primitive streak
detected detected
regionalExpression detected in the posterior primitive streak
allantois
detected detected
See Fig1A
allantois mesenchyme
detected detected
See Fig1B.
lateral plate mesoderm
detected detected
See Fig1A. 1B.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1929262
Entity Detected:Foxf1a, forkhead box F1a ( MGI:1347470)
Sequence:sense strand is shown

>MGI:1929262
CGGCCGCGCGGCTTCCGAAGGAAATGCCAGGCGCTCAAGCCTGTGTACAGCATGGTGAACGGGCTGGGCT
TCAACCACCTCCCCGACACCTACGGCTTCCAGGGCTCCGGAGGCCTCTCGTGCGCGCCCAACAGCCTGGC
GCTGGAGGGCGGCTTGGGCATGATGAATGGCCATTTGGCTGGCAACGTGGACGGCATGGCTTTGCCCAGC
CACTCGGTGCCACACCTGCCCTCCAACGGCGGCCACTCGTACATGGGTGGCTGCGGTGGCTCTGCGGCCG
GGGAGTACCCGCACCACGACAGCTCGGTGCCCGCTTCACCGCTGCTGCCGGCCGGCGCCGGCGGAGTCAT
GGAGCCGCACGCCGTTTACTCCAGCTCTGCAGCAGCCTGGCCGCCCGC
nt 343 - nt 740 of NM_010426.1
Notes:The Foxf1a (Foxf1) probe used in this study by Mahlapuu et al., 2001 [PMID:11124112] is described as "a 400 bp NotI/KspI cDNA fragment located immediately 3' of the forkhead box". Editors note: The co-ordinates with respect to NM_010426.1 were deduced from this given information.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:either: (involves: 129P2/OlaHsd * C57BL/6) or (involves: 129P2/OlaHsd * CD-1) or (involves: 129X1/SvJ * C57BL/6)
Age:6-8 Somite no.
Theiler Stage:TS12
Mutations:none (wild-type)
Preparation:sectioned wholemount
Procedures
General Information
Authors:Mahlapuu M; Ormestad M; Enerback S; Carlsson P, 2001 [PMID:11124112] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11124112] Mahlapuu M, Ormestad M, Enerback S, Carlsson P 2001 The forkhead transcription factor Foxf1 is required for differentiation of extra-embryonic and lateral plate mesoderm. Development (128):155-66
Links:MGI:1929300 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI