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EMAGE:3655

Foxf1a forkhead box F1a ( MGI:1347470)
TS14 (14-18 Somite no.)
in situ hybridisation

Data Images
EMAGE:3655
Figure 1G. Copyright: This image is from Mahlapuu M, Development 2001;128():155-166, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:3655Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3655_wholemount_strong_3D_1.wlz
3655_wholemount_moderate_3D_1.wlz
3655_wholemount_possible_3D_1.wlz
3655_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3655_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
mesenchyme derived from splanchnopleure
detected detected
thyroid primordium mesenchyme
detected detected
pharyngeal region mesenchyme
detected detected
rest of foregut mesenchyme
detected detected
foregut-midgut junction mesenchyme
detected detected
hindgut diverticulum mesenchyme
detected detected
midgut mesenchyme
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1929262
Entity Detected:Foxf1a, forkhead box F1a ( MGI:1347470)
Sequence:sense strand is shown

>MGI:1929262
CGGCCGCGCGGCTTCCGAAGGAAATGCCAGGCGCTCAAGCCTGTGTACAGCATGGTGAACGGGCTGGGCT
TCAACCACCTCCCCGACACCTACGGCTTCCAGGGCTCCGGAGGCCTCTCGTGCGCGCCCAACAGCCTGGC
GCTGGAGGGCGGCTTGGGCATGATGAATGGCCATTTGGCTGGCAACGTGGACGGCATGGCTTTGCCCAGC
CACTCGGTGCCACACCTGCCCTCCAACGGCGGCCACTCGTACATGGGTGGCTGCGGTGGCTCTGCGGCCG
GGGAGTACCCGCACCACGACAGCTCGGTGCCCGCTTCACCGCTGCTGCCGGCCGGCGCCGGCGGAGTCAT
GGAGCCGCACGCCGTTTACTCCAGCTCTGCAGCAGCCTGGCCGCCCGC
nt 343 - nt 740 of NM_010426.1
Notes:The Foxf1a (Foxf1) probe used in this study by Mahlapuu et al., 2001 [PMID:11124112] is described as "a 400 bp NotI/KspI cDNA fragment located immediately 3' of the forkhead box". Editors note: The co-ordinates with respect to NM_010426.1 were deduced from this given information.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:either: (involves: 129P2/OlaHsd * C57BL/6) or (involves: 129P2/OlaHsd * CD-1) or (involves: 129X1/SvJ * C57BL/6)
Age:14-18 Somite no.
Theiler Stage:TS14
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Mahlapuu M; Ormestad M; Enerback S; Carlsson P, 2001 [PMID:11124112] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11124112] Mahlapuu M, Ormestad M, Enerback S, Carlsson P 2001 The forkhead transcription factor Foxf1 is required for differentiation of extra-embryonic and lateral plate mesoderm. Development (128):155-66
Links:MGI:1929300 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI