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EMAGE:3701

Sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A ( MGI:107556)
TS18 (11 dpc)
in situ hybridisation

Data Images
EMAGE:3701
Figure 8E. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/0925-4773(96)00525-4] Mech Dev 57: 33-45, Adams RH; Betz H; Puschel AW, A novel class of murine semaphorins with homology to thrombospondin is differentially expressed during early embryogenesis. Copyright 1996.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: Base of the limb is indicated by short arrows. Anterior is to the top.
Expression Pattern Description
Spatial Annotation:
EMAGE:3701Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3701_wholemount_strong_3D_1.wlz
3701_wholemount_moderate_3D_1.wlz
3701_wholemount_weak_3D_1.wlz
3701_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3701_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
forelimb bud
detected detected
regionalExpression is in a stripe at the base of the limb.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3044047
Entity Detected:Sema5a, sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A ( MGI:107556)
Sequence:sense strand is shown

>MGI:3044047
CTCAACTGCTCCCGGCCTGGTGAGGTGCCCTTCTACTACAATGAGCTGCAGGGTACTTTCTTCCTGCCGG
AGCTGGATCTGATCTATGGTATCTTCACCACCAATGTAAACAGCATCGCGTCCTCTGCTGTCTGTGTCTT
CAACCTGAGCGCCATCTCACAGGCCTTCAATGGACCCTTCAAGTACCAAGAAAACTCTCGCTCAGCCTGG
CTGCCTTATCCCAACCCCAACCCCAATTTTCAGTGCGGCACCATGGACCAGGGCCTGTACGTAAACCTGA
CGGAAAGAAACCTACAGGATGCTCAGAAGTTCATTCTGATGCATGAAGTGGTCCAGCCAGTGACCACAGT
GCCCTCTTTCATGGAGGACAACAGCCGCTTCTCCCACTTAGCTGTTGATGTTGTGCAAGGCAGGGAGACT
CTGGTCCACATCATTTATCTGGGCACAGATTATGGCACCATTAAGAAAGTACGAGCTCCCCTGAGTCAGA
GCTCAGGCAGCTGTTTGCTGGAAGAGATTGAGCTTTTCCCAGAGAGGAGGAGTGAGCCCATCAGGAGCCT
GCAGATCCTCCACAGCCAGAGTGTCCTATTTGTGGGACTACAGGAGCATGTGGCCAAGATCCCCCTGAAG
AGGTGCCACTTCCATCAAACACGCAGTGCCTGCATTGGCGCTCAGGATCCTTACTGTGGCTGGGATGCGG
TGATGAAGAAATGCACCAGCCTGGAGGAGAGTCTGAGCATGACCCAGTGGGATCAGAGCATCCCCACCTG
TCCGACCAGAAATCTCACTGTAGATGGGAGCTTTGGCCCATGGTCACCGTGGACACCCTGTACACACACT
GATGGCACTGCTGTGGGCTCCTGCCTCTGCCGGTCCCGCTCCTGTGACAGACCAGCTCCTCAGTGTGGTG
GTTGGCAGTGTGAGGGCCCTAGAATGGAGATCACCAACTGTTCCAGGAATGGAGGCTGGACTCCCTGGAC
CTCCTGGTCTCCGTGCAGCACGACCTGTGGCATTGGCTTCCAAGTGCGGCAGCGATCCTGCAGCAACCCC
ACGCCCAGGCATGGCGGGCGCGTGTGCGTGGGCCAGAACAGGGAGGAAA
nt 853 - nt 1951 of X97817.1
Notes:The Sema5a probe used in this study by Adams et al., 1996 [PMID:8817451] was a "0.9 kb PCR-fragment for semF [Sema5a] (corresponding to sequences coding for amino acids 275-641)".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:11 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + unspecified
General Information
Authors:Adams RH; Betz H; Puschel AW, 1996 [PMID:8817451] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/0925-4773(96)00525-4] [ PMID:8817451] Adams RH, Betz H, Puschel AW 1996 A novel class of murine semaphorins with homology to thrombospondin is differentially expressed during early embryogenesis. Mech Dev (57):33-45
Links:MGI:3044160 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI