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EMAGE:3763

Hoxa3 homeobox A3 ( MGI:96175)
TS16 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:3763
0131b.jpg This embryo was treated with ProteinaseK for 3min.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:3763Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3763_wholemount_strong_3D_1.wlz
3763_wholemount_moderate_3D_1.wlz
3763_wholemount_weak_3D_1.wlz
3763_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3763_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
future hindbrain
detected detected
Expression was detected in dorsal and ventral rhombencephalon.
future spinal cord
detected detected
Expression was detected in dorsal and ventral spinal cord.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3506014
Entity Detected:Hoxa3, homeobox A3 ( MGI:96175)
Sequence:sense strand is shown

>MGI:3506014
ACGGTGGCTACCCCTACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTC
CGCCGCTCTGGGCACCGATGGCGTTGAGTACCATCGACCTGCCTGCTCCCTCCAGTCTCCCGCCAGCGCT
GGGGGCCACCCCAAAACTCATGAGCTGAGCGAAGCTTGTCTGCGCACCCTGAGCGGCCCTCCTAGTCAGC
CCCCAGGCCTGGGTGAACCACCTTTGCCTCCACCTCCTCCCCAGGCAGCGCCCCCAGCGCCCCAGCCTCC
ACAGCCCCCACCACAGCCCCCTGCGCCCACCCCTGCAGCTCCTCCGCCTCCCTCGTCTGTCTCTCCCCCT
CAAAGTGCCAACAGCAACCCTACCCCTGCCAGCACAGCCAAGAGCCCCCTGCTCAACTCTCCCACCGTGG
GCAAACAAATCTTTCCCTGGATGAAAGAGTCAAGGCAGAACACTAAGCAGAAAACCAGCGGCTCCAGCTC
AGGGGAGAGCTGCGCTGGTGACAAGAGCCCGCCTGGGCAGGCCTCGTCCAAGCGCGCGCGCACGGCGTAC
ACGAGCGCGCAGCTGGTAGAGCTGGAGAAG
nt 421 - nt 1010 of Y11717.1
Notes:The template DNA sequence was PCR amplified from E13.5 or P0 mouse brain, embryonic kidney or testis cDNA using: 5' primer: cgcggatccacggtggctacccctaccaagc 3'primer: ccgctcgagcttctccagctctaccagctgc.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL
Age:10.5 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Yu J., Tenzen T., Gray P.A., Fu H., Luo P., Zhao Q., Ferrari A., Yuk D.I., Tsung E.F., Cai Z., Alberta J.A., Cheng L.P., Liu Y., Stenman J.M., Valerius M.T., Billings N., Kim H.A., Greenberg M.E., Rowitch D.H., Stiles C.D., Ma Q., McMahon A.P. Indexed by GXD, Spatially mapped by EMAGE.
Principal investigator:Andrew P. McMahon, Molecular and Cellular Biology, Harvard, Department of Molecular and Cellular Biology Harvard University 16 Divinity Ave Room 1059, Cambridge, U.S.A MA 02138
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1126/science.1104935] [ PMID:15618518] Gray PA, 2004 Mouse brain organization revealed through direct genome-scale TF expression analysis. Science (306):2255-7
Links:MGI:3508728 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE