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EMAGE:38

Pax2 paired box gene 2 ( MGI:97486)
TS12 (4 Somite no.)
in situ hybridisation

Data Images
EMAGE:38
Fig 5k, Suda et al, 2001 [PMID:11493561] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:38Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
38_wholemount_strong_3D_1.wlz
38_wholemount_moderate_3D_1.wlz
38_wholemount_weak_3D_1.wlz
38_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:38_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
future hindbrain
detected detected
regionalExpression extends caudally into preotic sulcus at the most lateral (future dorsal) edge; in medial (future lateral and ventral) region, expression terminates more rostrally; corresponds to future r1 and/or r2
pre-otic sulcus
detected detected
regionalExpression extends caudally into preotic sulcus at the most lateral (future dorsal) edge; in medial (future lateral and ventral) region, expression terminates more rostrally; corresponds to future r1 and/or r2
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:21330
Entity Detected:Pax2, paired box gene 2 ( MGI:97486)
Notes:Probe used in this study by Suda et al, 2001 [PMID:11493561] is described as that used by Dressler et al., 1990 [PMID:1977574] ie.a "527 bp BamHI-EcoRI fragment from clone c31A". Figs 1 and 2 in Dressler et al., 1990 contain ambiguities in nucleotide numbering.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:4 Somite no.
Theiler Stage:TS12
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Suda et al, 2001 [PMID:11493561] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11493561] Suda Y, Hossain ZM, Kobayashi C, Hatano O, Yoshida M, Matsuo I, Aizawa S 2001 Emx2 directs the development of diencephalon in cooperation with Otx2. Development (128):2433-50
 [ PMID:1977574] Dressler GR, Deutsch U, Chowdhury K, Nornes HO, Gruss P 1990 Pax2, a new murine paired-box-containing gene and its expression in the developing excretory system. Development (109):787-95
Links:MGI:2148291 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI