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EMAGE:3815

Nkx6-1 NK6 homeobox 1 ( MGI:1206039)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:3815
Fig2G.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(98)00018-5] Mech Dev 72: 77-88, Qiu M; Shimamura K; Sussel L; Chen S; Rubenstein JL, Control of anteroposterior and dorsoventral domains of Nkx-6.1 gene expression relative to other Nkx genes during vertebrate CNS development. Copyright 1998

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: D, diencephalon; T, telencephalon; M, mesencephalon; R, rhombencephalon; S, spinal cord. Arrow indicates antterior limit of expression.
Expression Pattern Description
Spatial Annotation:
EMAGE:3815Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3815_wholemount_strong_3D_1.wlz
3815_wholemount_moderate_3D_1.wlz
3815_wholemount_weak_3D_1.wlz
3815_wholemount_possible_3D_1.wlz
3815_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3815_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
diencephalon
detected detected
regionalAnterior limit of expression begins near the zona limitans intrathalamica
future midbrain
detected detected
regionalExpression extends posteriorly along the whole ventral neural tube.
future hindbrain
detected detected
regionalExpression extends posteriorly along the whole ventral neural tube.
future spinal cord
detected detected
regionalExpression extends posteriorly along the whole ventral neural tube.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1206118
Entity Detected:Nkx6-1, NK6 homeobox 1 ( MGI:1206039)
Notes:The Nkx6-1 probe used in this study by Qiu et al, 1998 [PMID:9533954] is described as being transcribed from pQ444-22 which has a 0.9kb insert.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Qiu M; Shimamura K; Sussel L; Chen S; Rubenstein JL, 1998 [PMID:9533954] . Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(98)00018-5] [ PMID:9533954] Qiu M, Shimamura K, Sussel L, Chen S, Rubenstein JL 1998 Control of anteroposterior and dorsoventral domains of Nkx-6.1 gene expression relative to other Nkx genes during vertebrate CNS development. Mech Dev (72):77-88
Links:MGI:2450702 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI