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EMAGE:3977

Zic3 zinc finger protein of the cerebellum 3 ( MGI:106676)
TS08 (6.0 dpc)
in situ hybridisation

Data Images
EMAGE:3977
Figure 2E. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.modgep.2004.03.003] Gene Expr Patterns 4: 505-11, Elms P; Scurry A; Davies J; Willoughby C; Hacker T; Bogani D; Arkell R, Overlapping and distinct expression domains of Zic2 and Zic3 during mouse gastrulation. Copyright 2004.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: B, C and D indicate level of the sections spatially annotated in EMAGE:3976. This embryo is described as "pre-gastrulation" stage. Anterior is to the left.
Expression Pattern Description
Spatial Annotation:
EMAGE:3977Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3977_wholemount_strong_3D_1.wlz
3977_wholemount_moderate_3D_1.wlz
3977_wholemount_weak_3D_1.wlz
3977_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3977_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
epiblast
detected detected
regionalExpression is absent in the most distal epiblast cells.
embryo endoderm
not detected not detected
homogeneous
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3526556
Entity Detected:Zic3, zinc finger protein of the cerebellum 3 ( MGI:106676)
Sequence:sense strand is shown

>MGI:3526556
ATTGAATCCCTTCGGGGACTCAACCCACGCTGCGGCCGCCGCCGCTGCCGCCGCTGCCTTCAAGCTGAGC
CCAGCCACCGCTCACGATCTGTCTTCGGGCCAGAGCTCAGCGTTCACACCGCAGGGTTCAGGTTATGCCA
ATGCCCTGGGCCACCATCACCACCACCATCACCACCATCACGCCAGCCAGGTGCCCACCTACGCGCGGCG
TGCCTCCGCCGCTTTCAACTCCACGCGCGACTTTCTGTTCCGTCAGCGCGGTTCTGGGCTCAGCGAGGCA
GCCTCCGGGGGCGGGCAGCACGGGCTTTTCGCTGGCTCGGCGAGCAGTCTTCACGCTCCAGCTGGTATTC
CTGAGCCTCCTAGCTACTTGCTCTTTCCTGGGCTTCATGAGCAGGGCGCTGGGCACCCGTCGCCCACAGG
GCACGTGGACAACAACCAGGTCCATCTGGGGCTGCGCGGGGAGCTATTTGGCCGTGCAGACCCATACCGC
CCCGTGGCTAGCCCGCGCACGGACCCCTACGCGGCCAGTGCGCAGTTCCCTAACTATAGCCCCATGAACA
TGAACATGGGCGTGAACGTGGCGGCCCACCACGGGCCGGGCGCCTTCTTCCGTTACATGCG
nt 646 - nt 1266 of NM_009575.1
Notes:The Zic3 probe used in this study by Elms et al., 2004 [PMID:15261827] was "a cDNA probe corresponding to bases 646-1266 of mouse Zic3 (Acc No.: NM_009575)".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:involves: 101/HeH * C3H/HeH
Age:6.0 dpc
Theiler Stage:TS08
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Elms P; Scurry A; Davies J; Willoughby C; Hacker T; Bogani D; Arkell R, 2004 [PMID:15261827] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.modgep.2004.03.003] [ PMID:15261827] Elms P, Scurry A, Davies J, Willoughby C, Hacker T, Bogani D, Arkell R 2004 Overlapping and distinct expression domains of Zic2 and Zic3 during mouse gastrulation. Gene Expr Patterns (4):505-11
Links:MGI:3526650 same experiment
 EMAGE:3976 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI