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EMAGE:4038

Cux2 cut-like homeobox 2 ( MGI:107321)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4038 EMAGE:4038
Figure 1A. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S1567-133X(03)00123-6] Gene Expr Patterns 3: 571-7, Iulianella A; Vanden Heuvel G; Trainor P, Dynamic expression of murine Cux2 in craniofacial, limb, urogenital and neuronal primordia. Copyright 2003. Figure 1E. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S1567-133X(03)00123-6] Gene Expr Patterns 3: 571-7, Iulianella A; Vanden Heuvel G; Trainor P, Dynamic expression of murine Cux2 in craniofacial, limb, urogenital and neuronal primordia. Copyright 2003.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
In A: Edge expression in the distal maxillary process indicated by small white arrow. 1, first pharyngeal arch; 2, second pharyngeal arch; fb, forelimb bud; lpm, lateral plate mesoderm. In E (frontal view), mx - maxilla, ma - mandible.
Expression Pattern Description
Spatial Annotation:
EMAGE:4038Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4038_wholemount_strong_3D_1.wlz
4038_wholemount_moderate_3D_1.wlz
4038_wholemount_weak_3D_1.wlz
4038_wholemount_possible_3D_1.wlz
4038_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4038_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
trunk mesenchyme
detected detected
regionalExpression is in the lateral plate mesoderm.
1st branchial arch mandibular component
detected detected
regionalExpression is in the distal portion.
1st branchial arch maxillary component
detected detected
regionalExpression is in the distal portion.
forelimb bud mesenchyme
detected detected
regionalExpression is in the progress zone.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2687298
Entity Detected:Cux2, cut-like homeobox 2 ( MGI:107321)
Sequence:sense strand is shown

>MGI:2687298
CCCTGGGTGGGAAGCCCTTCTCAAGCAGCCAGGCTGCGGGGGGCATCCAGGAGATGGTGGCCATGTCCCC
AGAGCTGGACACATACTCCATCACCAAGAGAGTCAAGGAGGTCCTCACCGACAACAACCTAGGGCAGCGG
CTGTTTGGTGAGAGCATCTTGGGGTTGACCCAGGGCTCCGTGTCAGATCTGCTGTCGAGGCCCAAGCCCT
GGCACAAACTGAGCTTGAAGGGCCGGGAGCCCTTTGTGCGTATGCAGCTGTGGCTGAGTGACCCCCACAA
CGTGGAGAAGCTTCGGGACATGAAGAAGCTGGAGAAGAAAGCCTATCTGAAGCGCCGCTATGGGCTCATC
GGCACCGGCTCGGACAGCGAGTCACCGGCTGCGCACTCCGAGTGCCCCAGCCCGTGTTTGCAGCCCCAGG
AGTTGAGTCTCATGCAGGCCAAGAAGCCCAGGGTGGTGCTGGCGCCCGCCGAGAAGGAGGCTCTGCGGAA
GGCCTACCAGCTCGAGCCGTACCCCTCGCAGCAGACCATAGAGCTGCTCTCCTTCCAACTCAACCTCAAG
ACGAACACCGTCATCAACTGGTTCCACAACTACAGGTCCAGGATGCGCCGTGAAATGCTGGTGGAGGGGA
CACAGGATGATCCTGACTTTGACCCGAGTGGGGGTCCCAATGTCCTGACGCCAGGCCACACCCACAGAGA
GCCCACCCCACAGAGCCCCGACTCAGAGACTGAGGACCAAAAGCCCCCCATGAAGAGCTTAGAGCTGCAA
GAGCCTGAGGGTCCCCTACAGCGAGCTGCCCCAGACAGGGCTCTGGTGAAGATCAAACAGGAAGAGGGTT
TGGAGGTGGATGGAGACAGTCAGCCCCAGGACGTGGGGGATCCAGACCGAGGGCAAGATGGCCCCAAAGA
GGAGCATACCCACCCTCTGGGAAACAGTGACCTCTCAGAGCTGGCCCCAGGGCCCTTTCTTTCAGGCACA
CCCAATCCAGACTGTCCTTCATTGCACAACCCCCAAGAAAAGGGGACTGGGGAACAGGTTCACTCAGAGC
CTCTGAGTTTCAAGTCCACCTCCGAATCCTCCTGCTGCAGCCTGGAGGGGCCACCGAACTCTCCCTCTGT
CATCTCCTCGCCAGACCTCACGACATGTGTGTCACCTGCCCCTTCCTCCTCAGCCCCCATCTCCCCATCC
TTACCTGGTGCCCCACCTGCCAAAGTGCCGAGTACCAGCCCCACTGGTGACACAGCCGCAGCCTTGCACC
CCAGCACTAAGGTGAACCCCAACTTGCAGCGGCGGCATGAGAAAATGGCCAACTTGAACAGTATAATCTA
CCGGCTGGAGAGGGCTGCCAACCGGGAAGAGGTCCTGGAGTGGGAATTCTGAAGCTGGGGTTGAGGG
nt 3174 - nt 4570 of NM_007804.1
Notes:The Cux2 probe used in this study by Iulianella et al., 2003 [PMID:12971989] was "obtained by PCR amplification of E11.5 head RNA using the following primers: CCCTCAACCCCAGCTTCAG and CCCTGGGTGGGAAGCCCTT. The resulting 1.4 KB fragment contained the third cut domain and homeodomain up to 25 nucleotides following the stop site in the 3' untranslated region. The fragment was cloned into the pCRII-TOPO vector using the TOPO TA cloning kit from Invitrogen (Carlsbad, California) and confirmed by sequencing. Digoxigenin-labeled antisense riboprobes were transcribed using Sp6 RNA polymerase from EcoRV-linearized templates."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:CD-1
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Iulianella A; Vanden Heuvel G; Trainor P, 2003 [PMID:12971989] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S1567-133X(03)00123-6] [ PMID:12971989] Iulianella A, Vanden Heuvel G, Trainor P 2003 Dynamic expression of murine Cux2 in craniofacial, limb, urogenital and neuronal primordia. Gene Expr Patterns (3):571-7
Links:MGI:2687306 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI