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EMAGE:4060

Pcp4l1 Purkinje cell protein 4-like 1 ( MGI:1913675)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4060 EMAGE:4060
Figure 2B. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.modgep.2003.11.001] Gene Expr Patterns 4: 297-301, Bulfone A; Caccioppoli C; Pardini C; Faedo A; Martinez S; Banfi S, Pcp4l1, a novel gene encoding a Pcp4-like polypeptide, is expressed in specific domains of the developing brain. Copyright 2004. Figure 2H. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.modgep.2003.11.001] Gene Expr Patterns 4: 297-301, Bulfone A; Caccioppoli C; Pardini C; Faedo A; Martinez S; Banfi S, Pcp4l1, a novel gene encoding a Pcp4-like polypeptide, is expressed in specific domains of the developing brain. Copyright 2004.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:4060Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4060_wholemount_strong_3D_1.wlz
4060_wholemount_moderate_3D_1.wlz
4060_wholemount_possible_3D_1.wlz
4060_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4060_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
future midbrain roof plate
detected detected
rhombomere 01 roof plate
detected detected
future midbrain
detected detected
regionalExpression is in a ring around the mid/hindbrain junction, and in the cerebellar roof plate.
future hindbrain
detected detected
regionalExpression is in a ring around the mid/hindbrain junction, and in the cerebellar roof plate.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3041424
Entity Detected:Pcp4l1, Purkinje cell protein 4-like 1 ( MGI:1913675)
Sequence:sense strand is shown

>MGI:3041424
CCGGAGCATTTGGGGCAGCATTAAGCAACAGCTCGCAGCGTGCACTCTCCCCTCCGAGCCCTCCAGGGCC
CCTGCCCCGGAGCCCAGCAACTCTCGGCCGCGGTTCACGCACGCATCTCCGAGGACCCCTTGCCTCACCT
GCGCCTGCCACGCCCGTCCGGCCGCCGGGATGAGCGAGCTTAACACCAAAACACCTCCAGCAGCCAACCA
GGCATCTGACCCTGAGGAAAAAGGGAAGCCTGGCAGCATCAAGAAGGCCGAGGAGGAGGAAGAAATTGAC
ATTGACCTGACAGCGCCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCAGA
AGAGGAAAAAGGATTCCAGCTCCTGAATGGCCAGGCCTCCCCTTAACCCTTCTACTTCCTCTCTCCCCTC
CACAGCTCTGACTCTCACGTATCTCATTCCTTCATCCCTCTAGCCTCTCCCCAAGGCAAGCTTAACCTTT
ATATATTCTTGTCTCAGGCTCTCTTAAGCCATCACAGTAGTAGAGGCACAAGGATGCGAAGGTGAAGACT
CTAGCTGGTAGTCACTAGGCTAAGGGTGGATCAGTCCATTTAGGAGAACAAAAGGTTTTGAGATGTGAAA
TTCTCCCCTTTGCCTAATGCTAAGGGCAGGAGGGGGCAAGCCCTCAGAGTGCAGAGCCTCAAGGTGGGGC
ACATGTAGGCTTCTGCCAGTTGCACCATTAACACTTCAGGCAACACTTTCAGCTCCCTCTGCACAACTCC
TCCCATCTCCCGTGTTTCAGCCCTAGTGCAGCTGCACTTTCTCCCGGGCTGACCTAAATCCAGGAGCTTG
CAAAATGTGGGGTGCATGCCTTTAGTCCCAGACCTTGGAAGGCAGAGGCAGGTGGATCTCTGTATGTTCG
AGCCAGCCTGGTTGACATCATGAGTCCCAGGTTAGCCAAGGCTACAGAGACCCTGTCTCAAAACAGAACA
AAACAAAAACCAAAAAAACCTACCCATGCAAAAATAAATATAAATAAATAAATAAATAAGGCGGCTTACT
ACACTAGTGCATGCTGAGTAGATTCCTCCCAAGGAAAGAGAACTGGGGCTGGTAGAGGCAAGGGAGGAAG
AGCTTCCTTCACCATCCAGACTGAGGTCAGAAGAGCCAGTGATGGCAGAAGGTTCAGGGACGACAGGCCG
GGAAATGAAAACTGAGAAACGTTTAGGAAGGAAAGCAGAACGAGATGGTCAAGATGTCTGAAGCTACACA
CTATTGTTGTTAACCTAATACTCCACGAGGGGCTCTCTGGCCTTTGCTAACCTGCCTACCTCTTTACCCG
CCCCCATCTCTAGTCATCCCTAGAGCCATGTGAACCAAGTGACACCCCTATAGCTCTCAGCCACCCCACT
GTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTTAATAATGATGACAATAAAAAAAG
CCCTCAAATGGGGGCATTGAACCTC
nt 81 - nt 1575 of NM_025557.1
Notes:The Pcp4l1 probe used in this study by Bulfone et al., 2004 [PMID:15053978] was generated from the entire insert of "EST clone (clone ID: UI-M-AQ0-aai-c-05-0-UI) containing a cDNA fragment corresponding to the Pcp4l1 full-length cDNA". Editors Note: Pairwise BLAST of the 5' and 3' EST sequence reads of clone UI-M-AQ0-aai-c-05-0-UI (BE859333.1 and AI836143.1 respectively), identify that its insert sequence corresponds to nt 81-1575 of the Mus musculus Purkinje cell protein 4-like 1 (Pcp4l1), mRNA RefSeq NM_025557.1.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Bulfone A; Caccioppoli C; Pardini C; Faedo A; Martinez S; Banfi S, 2004 [PMID:15053978] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.modgep.2003.11.001] [ PMID:15053978] Bulfone A, Caccioppoli C, Pardini C, Faedo A, Martinez S, Banfi S 2004 Pcp4l1, a novel gene encoding a Pcp4-like polypeptide, is expressed in specific domains of the developing brain. Gene Expr Patterns (4):297-301
Links:MGI:3041434 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI